View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6189_low_13 (Length: 259)
Name: NF6189_low_13
Description: NF6189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6189_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 35742453 - 35742688
Alignment:
| Q |
17 |
actaactccatgcaattggaggaaacatccaccattgcttccttgatctttatcaaaatatggaagtcgaattcaatgttgtgactcttaaacttcttag |
116 |
Q |
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| T |
35742453 |
actaactccatgcaattggaggaaacatccaccattgcttccttgatctttatcaaaatatggaagttgaattcaatgttgtgactcttaaacttcttag |
35742552 |
T |
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| Q |
117 |
actcatcatctttggttcgttccaaagcatctaaatcggttttaatctgcatgcgttggtgcacttcggtggttagaatgttagaaataattgactgcat |
216 |
Q |
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| T |
35742553 |
actcatcatctttggttcgttccaaagcatctaaatcggttttaatctgcatgcgttgttgcacttcggtggttagaatgttagaaataattgactgcat |
35742652 |
T |
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| Q |
217 |
taggacacaaatataagtacatataaatgatgatgt |
252 |
Q |
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| T |
35742653 |
taggacacaaatataagtacatataaatgatgatgt |
35742688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 3424679 - 3424532
Alignment:
| Q |
18 |
ctaactccatgcaattggaggaaacatccaccattgcttccttgatctttatcaaaatatggaagtcgaattcaatgttgtgactcttaaacttcttaga |
117 |
Q |
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|||||||||||||||| || |||||||||||||||||||| || || || | | || | |||||||||||| ||||| || | |||||| ||||| | |
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| T |
3424679 |
ctaactccatgcaatttgaagaaacatccaccattgcttctttaattttgacaaggatgtagaagtcgaattcgatgttatggcccttaaatttcttcaa |
3424580 |
T |
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| Q |
118 |
ctcatcatctttggttcgttccaaagcatctaaatcggttttaatctg |
165 |
Q |
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|| |||||||| ||||| |||||||||||||| || ||||| ||||| |
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| T |
3424579 |
ttcttcatctttcgttcgctccaaagcatctaattctgttttgatctg |
3424532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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