View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6189_low_16 (Length: 249)
Name: NF6189_low_16
Description: NF6189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6189_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 49292289 - 49292519
Alignment:
| Q |
1 |
atgatttttatgacttaaaggactaggtgcatactttaactaacataaagaactaatttgaaattataaaaactgaatggattaatataatacaaatatt |
100 |
Q |
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| T |
49292289 |
atgatttttatgacttaaaggattaggtgcatactttaactaatataaagaactaatttgaaattataaaaactgaatggactaatctaatacaaatatt |
49292388 |
T |
|
| Q |
101 |
aaatttaaaggacctcatgatacatttgaccaaataaaatcaaaggagtaacaaaattgtctttcaaaataattttcttgtacctcaatagcttcagata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49292389 |
aaatttaaaggacctcatgatacatttgaccaaataaaatcaaaggagtaacaaaattgtctttcaaaataattttcttgtacctcaatagcttcagata |
49292488 |
T |
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| Q |
201 |
cccctggtaaggttgaaatatcaccaccaac |
231 |
Q |
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| T |
49292489 |
cccctggtaaggttgaaatatcaccaccaac |
49292519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 51518768 - 51518861
Alignment:
| Q |
4 |
atttttatgacttaaa-ggactaggtgcatactttaactaacataaagaactaatttgaaattataaaaactgaatggattaatataatacaaa |
96 |
Q |
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| T |
51518768 |
atttttatgacttaaaaggactatgtgcacaattttactaacacaaagaaccaatttgaaattataaaaactaaaatgattaatctattacaaa |
51518861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 11862524 - 11862656
Alignment:
| Q |
5 |
tttttatgacttaaaggactaggtgcatactttaactaacataaagaactaatttgaaattataaaaactgaatggattaatataatacaaatattaaat |
104 |
Q |
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| T |
11862524 |
tttttatgacttaaaggactaggtgcatacttttattgacatcaaggaccaatttgaaactaaaaaaacttaaaggactgatctggtacaaacattaaac |
11862623 |
T |
|
| Q |
105 |
ttaaaggacctcatgatacatttgaccaaataa |
137 |
Q |
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||| |||||| || ||| || |||||| ||||| |
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| T |
11862624 |
ttacaggaccccaagatgcaattgacctaataa |
11862656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 34366936 - 34366815
Alignment:
| Q |
6 |
ttttatgacttaaaggactaggtgcatactttaactaacataaagaactaatttgaaattataaaaactgaatggattaatataatacaaatattaaatt |
105 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||| || |||| |||| || ||||||| || ||| |||| |||||| ||| || | |
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| T |
34366936 |
ttttatgacttaaaggactaggtgcacacttctactaacataaaggaccaattagaaactaaaaaaactaaaaggactaatccggtacaaacattcaact |
34366837 |
T |
|
| Q |
106 |
taaaggacctcatgatacattt |
127 |
Q |
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||||||||| || ||| ||||| |
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| T |
34366836 |
taaaggaccccaggatgcattt |
34366815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 25576256 - 25576313
Alignment:
| Q |
6 |
ttttatgacttaaaggactaggtgcatactttaactaacataaagaactaatttgaaa |
63 |
Q |
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||||||| | ||||| |||||||||| ||||| |||||||||||| |||||||||||| |
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| T |
25576256 |
ttttatggcctaaagaactaggtgcacacttttactaacataaaggactaatttgaaa |
25576313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 30053698 - 30053616
Alignment:
| Q |
6 |
ttttatgacttaaaggactaggtgcatactttaactaacataaagaactaatttgaaattataaaaactgaatggattaatat |
88 |
Q |
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||||||||||||||||||||| |||| | ||| |||||||||||| | || |||||| || ||||||| || ||||| |||| |
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| T |
30053698 |
ttttatgacttaaaggactagatgcacaatttcactaacataaaggatcaaattgaaactaaaaaaactaaaaggattgatat |
30053616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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