View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6189_low_5 (Length: 427)
Name: NF6189_low_5
Description: NF6189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6189_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 49292245 - 49291826
Alignment:
| Q |
1 |
tatgtgaattgttaagttagataattatgtttggtattataaacggtttttagaccttccacctcaatgttaaatggttgcttaagcacttttcaacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49292245 |
tatgtgaattgttaagttagataattatgtttggtgttataaacggtttttagaccttctacctcaatgttaaatgattgcttaagcacttttcaacaaa |
49292146 |
T |
|
| Q |
101 |
gttagaagaaaaaaggatcaacttgttgcnnnnnnnnnnnnnnnnntattaacgaactaacttgttcactttaattgacataaaagatcaatttnnnnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49292145 |
gttagaagaaaaaaggatcaacttgttgcaaaaataaaaaataaaatattaaccaactaacttgttcactttaattgacataaaagatcaattttaaaaa |
49292046 |
T |
|
| Q |
201 |
nnnnnnnngaaactaaaagaactattccggtaaaagcgttaaactgaaaggatttcatgatgcatttggaaattttatatacatggatatgttaaaatat |
300 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49292045 |
taaaataaaaaactaaaagaactattccgatacaagcgttaaactgaaaggatttcatgatgcatttggaaattttatatacatggatatgttaaaatat |
49291946 |
T |
|
| Q |
301 |
aaaatgggaaaaaacatacataatattcgcatgtagacaaaatttcagagttgtgttatagaataatgattaggcagtagataagttttatggtttcaca |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49291945 |
aaaatgggaaaaaacatacataatcttcgcctgtagacaaaatttcagagttgtgttatagaataatgattaggcagtagataagttttatggtttcaca |
49291846 |
T |
|
| Q |
401 |
aattttattgtcctatgcta |
420 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
49291845 |
aattttattgtcctatgcta |
49291826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 42669124 - 42669210
Alignment:
| Q |
30 |
tttggtattataaacggtttttagaccttccacctcaatgttaaatggttgcttaagcacttttcaacaaagttagaagaaaaaagg |
116 |
Q |
| |
|
|||||| | |||||| ||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||| || ||||||||| |
|
|
| T |
42669124 |
tttggtgtcataaacactttttggaccttccacctcaacgttaaatggtcatgtaagcacttttgaacaaagttggatgaaaaaagg |
42669210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 24755035 - 24755124
Alignment:
| Q |
27 |
atgtttggtattataaacggtttttagaccttccacctcaatgttaaatggttgcttaagcacttttcaacaaagttagaagaaaaaagg |
116 |
Q |
| |
|
||||||||| | |||||| ||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||| || ||||||||| |
|
|
| T |
24755035 |
atgtttggtgtcataaacactttttggaccttctacctcaatgttaaatggccatgtaagcactttttaacaaagttggatgaaaaaagg |
24755124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 40283922 - 40283815
Alignment:
| Q |
22 |
taattatgtttggtattataaacggtttttagaccttccacctcaatgttaaatggttgcttaagcacttttcaacaaagttagaagaaaaaag-gatca |
120 |
Q |
| |
|
|||| ||||||||| | |||||| ||||| |||||||||||||||||||||| || | ||||||||||| ||||||||| || ||| |||| ||||| |
|
|
| T |
40283922 |
taatcatgtttggtgtcataaacactttttggaccttccacctcaatgttaaaagg-tcattaagcactttataacaaagttggatgaagaaagagatca |
40283824 |
T |
|
| Q |
121 |
acttgttgc |
129 |
Q |
| |
|
| ||||||| |
|
|
| T |
40283823 |
atttgttgc |
40283815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 15089161 - 15089122
Alignment:
| Q |
39 |
ataaacggtttttagaccttccacctcaatgttaaatggt |
78 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
15089161 |
ataaacgctttttggaccttccacctcaatgttaaatggt |
15089122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 9550696 - 9550776
Alignment:
| Q |
22 |
taattatgtttggtattataaacggtttttagaccttccacctcaatgttaaatggttgcttaagcacttttcaacaaagtt |
103 |
Q |
| |
|
|||||||||||||| | ||||| |||||| ||||||||||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
9550696 |
taattatgtttggtgtcataaatatttttta-accttccacctcaatgttaaatggtcatataatcactttttaacaaagtt |
9550776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 1229024 - 1228948
Alignment:
| Q |
27 |
atgtttggtattataaacggtttttagaccttccacctcaatgttaaatggttgcttaagcacttttcaacaaagtt |
103 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||| ||| |||||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
1229024 |
atgtttggtatcataaatactttttggaccttctaccgcaatgttaaatggtcatttaaacactttttaacaaagtt |
1228948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University