View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6189_low_7 (Length: 413)

Name: NF6189_low_7
Description: NF6189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6189_low_7
NF6189_low_7
[»] chr3 (5 HSPs)
chr3 (1-78)||(10723687-10723764)
chr3 (9-74)||(9020633-9020698)
chr3 (9-74)||(34706426-34706491)
chr3 (10-78)||(30675668-30675736)
chr3 (11-74)||(31543487-31543550)
[»] chr4 (12 HSPs)
chr4 (1-78)||(54681840-54681917)
chr4 (7-78)||(10310401-10310472)
chr4 (7-78)||(36119541-36119612)
chr4 (7-72)||(23544135-23544200)
chr4 (7-78)||(29696434-29696505)
chr4 (14-65)||(46307359-46307410)
chr4 (8-78)||(48035439-48035509)
chr4 (16-78)||(48706914-48706976)
chr4 (7-62)||(31518411-31518466)
chr4 (7-78)||(50303502-50303573)
chr4 (7-78)||(50302228-50302299)
chr4 (13-72)||(55961265-55961324)
[»] chr2 (4 HSPs)
chr2 (7-78)||(29078408-29078479)
chr2 (7-78)||(13481460-13481531)
chr2 (7-73)||(31642504-31642570)
chr2 (16-78)||(3601810-3601872)
[»] chr7 (11 HSPs)
chr7 (7-78)||(39878640-39878711)
chr7 (10-73)||(22491726-22491789)
chr7 (14-73)||(41085021-41085080)
chr7 (9-72)||(45225711-45225774)
chr7 (7-72)||(33055497-33055562)
chr7 (6-78)||(23184563-23184635)
chr7 (12-74)||(41816283-41816345)
chr7 (9-74)||(45024696-45024761)
chr7 (9-74)||(48259146-48259211)
chr7 (10-73)||(29272782-29272845)
chr7 (7-78)||(45223652-45223723)
[»] chr5 (4 HSPs)
chr5 (14-73)||(43229214-43229273)
chr5 (14-72)||(19555227-19555285)
chr5 (7-74)||(39144466-39144533)
chr5 (13-78)||(4921483-4921548)
[»] chr8 (7 HSPs)
chr8 (9-73)||(16220760-16220824)
chr8 (12-78)||(39566056-39566122)
chr8 (10-74)||(40917887-40917951)
chr8 (7-74)||(41313044-41313111)
chr8 (9-66)||(13637696-13637752)
chr8 (9-66)||(13738109-13738165)
chr8 (7-71)||(3460772-3460836)
[»] scaffold0392 (1 HSPs)
scaffold0392 (7-78)||(857-928)
[»] chr6 (5 HSPs)
chr6 (7-78)||(34516331-34516402)
chr6 (7-72)||(6271731-6271796)
chr6 (14-72)||(24167254-24167312)
chr6 (10-72)||(28482697-28482759)
chr6 (10-72)||(29795112-29795174)
[»] scaffold0294 (1 HSPs)
scaffold0294 (10-78)||(2140-2208)
[»] chr1 (6 HSPs)
chr1 (14-73)||(1047881-1047940)
chr1 (14-73)||(14592083-14592142)
chr1 (7-78)||(34079908-34079979)
chr1 (9-74)||(8249000-8249065)
chr1 (14-74)||(35950029-35950089)
chr1 (8-77)||(25018196-25018265)


Alignment Details
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 10723687 - 10723764
Alignment:
Q  1 tactgtatatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  10723687 tactatatatagatctttctttccttcaactttctattccactttctattataccaaacaactaaaataatcccctca 10723764  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 9020633 - 9020698
Alignment:
Q  9 atagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatccc 74  Q
    ||||||||||||||||| ||| |||||| |||||||| ||||| |||||||||| |||||||||||    
T  9020633 atagatctttctttcctccaattttctaatccactttctattaaaccaaacaaccaaaacaatccc 9020698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 34706491 - 34706426
Alignment:
Q  9 atagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatccc 74  Q
    ||||||||||||||||| |||  ||||| |||| ||| ||||| ||||||||||||||||||||||    
T  34706491 atagatctttctttcctccaatgttctaatccattttctattaaaccaaacaactaaaacaatccc 34706426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 30675736 - 30675668
Alignment:
Q  10 tagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||||||||||||||| |||||||| ||||||||||   || ||||||||||| |||||||||| ||||    
T  30675736 tagatctttctttcctccaactttccattccactttcccttgtaccaaacaaccaaaacaatcctctca 30675668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 31543487 - 31543550
Alignment:
Q  11 agatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatccc 74  Q
    ||||||||||||||||  ||||||||  ||||||| | |||||||||||||| | |||||||||    
T  31543487 agatctttctttcctttcactttctaacccactttctcttataccaaacaaccataacaatccc 31543550  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 54681917 - 54681840
Alignment:
Q  1 tactgtatatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||| ||||||||| |||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  54681917 tactatatatagatttttccttccttcaattttctattccactttctattataccaaacaactaaaacaatcccctca 54681840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 10310401 - 10310472
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||    
T  10310401 atatggatctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatcccctca 10310472  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 36119541 - 36119612
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    ||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| ||||    
T  36119541 atatatatctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatcctctca 36119612  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 23544200 - 23544135
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatc 72  Q
    ||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||    
T  23544200 atatatatctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatc 23544135  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 29696434 - 29696505
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||||||||||||||||||| | ||||||||| |||||| | | |||||||||||| ||||||||| |||||    
T  29696434 atatagatctttctttccttaacctttctatttcactttctttcataccaaacaaccaaaacaatctcctca 29696505  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 46307410 - 46307359
Alignment:
Q  14 tctttctttccttcaactttctattccactttttattataccaaacaactaa 65  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  46307410 tctttctttccttcaactttctattcaactttctcttataccaaacaactaa 46307359  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 48035509 - 48035439
Alignment:
Q  8 tatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||||||||||||||||| |||||||| | |||||||| | |||||| ||||||| |||| ||||||||||    
T  48035509 tatagatctttctttcctccaactttccaatccactttctcttatacgaaacaaccaaaataatcccctca 48035439  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 48706976 - 48706914
Alignment:
Q  16 tttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||||||||| ||||||||||||||||||| | || ||||||||||| |||||||||| ||||    
T  48706976 tttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaacaatcctctca 48706914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 31518466 - 31518411
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaac 62  Q
    ||||||||||||||||||||  |||||||| |||||||| | ||||||||||||||    
T  31518466 atatagatctttctttcctttcactttctaatccactttatcttataccaaacaac 31518411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 50303502 - 50303573
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    ||||||||||||||||| || | |||||||||  |||||   |||||||||||||| |||||||||||||||    
T  50303502 atatagatctttctttctttaacctttctattttactttcctttataccaaacaaccaaaacaatcccctca 50303573  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 50302228 - 50302299
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||||||| |||||||| || | |||||||||  |||||   |||||||||||||| |||||||||||||||    
T  50302228 atatagatatttctttctttaacctttctattttactttcctttataccaaacaaccaaaacaatcccctca 50302299  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 55961265 - 55961324
Alignment:
Q  13 atctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatc 72  Q
    ||||||||||||| ||| |||||| |||||||| ||||| |||||| ||| |||||||||    
T  55961265 atctttctttcctccaattttctaatccactttctattaaaccaaataaccaaaacaatc 55961324  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 29078479 - 29078408
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||    
T  29078479 atatggatctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatcccctca 29078408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 13481531 - 13481460
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    ||||||||||||||||||| |||||||||||||||||||   || ||||||||||| |||||||||| ||||    
T  13481531 atatagatctttctttcctccaactttctattccactttcccttgtaccaaacaaccaaaacaatcctctca 13481460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 31642504 - 31642570
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcc 73  Q
    |||||||||||||||||||||||||||||| |  ||||| | |||||||||||||| ||||||||||    
T  31642504 atatagatctttctttccttcaactttctactttactttcttttataccaaacaaccaaaacaatcc 31642570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 3601872 - 3601810
Alignment:
Q  16 tttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||||||||||||| |||||| |||||||| | || || |||||||| |||||||||| ||||    
T  3601872 tttctttccttcaattttctactccactttcttttgtatcaaacaaccaaaacaatcctctca 3601810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 39878711 - 39878640
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    ||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||| ||||    
T  39878711 atatatatctttctttccttcaactttctattccattttcttttataccaaacaaccaaaacaatcctctca 39878640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 22491726 - 22491789
Alignment:
Q  10 tagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcc 73  Q
    ||||||||||||||||| ||||||||| |||||||| | || ||||||||||| ||||||||||    
T  22491726 tagatctttctttccttaaactttctactccactttctcttgtaccaaacaaccaaaacaatcc 22491789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 41085080 - 41085021
Alignment:
Q  14 tctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcc 73  Q
    |||||||||||| ||||||||||||||||||| | |||||||||||||| |||| |||||    
T  41085080 tctttctttcctccaactttctattccactttctcttataccaaacaaccaaaataatcc 41085021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 45225711 - 45225774
Alignment:
Q  9 atagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatc 72  Q
    |||||| |||||||||||||| |||||| |||||||| ||||| |||||||||| |||||||||    
T  45225711 atagatttttctttccttcaattttctaatccactttctattaaaccaaacaaccaaaacaatc 45225774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 33055497 - 33055562
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatc 72  Q
    |||||||||||||||| ||| ||| ||||| | |||||| | ||||||||||||||||||||||||    
T  33055497 atatagatctttcttttctttaacattctacttcactttctcttataccaaacaactaaaacaatc 33055562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 23184635 - 23184563
Alignment:
Q  6 tatatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||| |||||||||||||||| ||||||||| |||||| |  |||||| ||||||| ||||| ||||||||||    
T  23184635 tatagagatctttctttcctttaactttctactccactctcgattatatcaaacaattaaaataatcccctca 23184563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 41816283 - 41816345
Alignment:
Q  12 gatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatccc 74  Q
    |||||||||||||| ||| |||| | |||||||| ||||| |||||||||| |||||||||||    
T  41816283 gatctttctttcctccaattttccaatccactttctattaaaccaaacaaccaaaacaatccc 41816345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 45024696 - 45024761
Alignment:
Q  9 atagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatccc 74  Q
    ||||||||||||||||| ||| |||| | |||| ||| ||||| |||||||||| |||||||||||    
T  45024696 atagatctttctttcctccaattttccaatccaatttctattaaaccaaacaaccaaaacaatccc 45024761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 48259211 - 48259146
Alignment:
Q  9 atagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatccc 74  Q
    ||||||||||||||||| ||| |||  | |||||||| ||||| |||||||||| |||||||||||    
T  48259211 atagatctttctttcctccaatttttcaatccactttctattaaaccaaacaaccaaaacaatccc 48259146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 29272845 - 29272782
Alignment:
Q  10 tagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcc 73  Q
    ||||||||||||| | |||||||| ||||| ||||| | || ||||||||||| ||||||||||    
T  29272845 tagatctttcttttcatcaactttttattctactttctcttgtaccaaacaaccaaaacaatcc 29272782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 45223723 - 45223652
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||||||| |||||| ||| |||| || || | |||||| | ||||||||||||||||||||||||| ||||    
T  45223723 atatagatttttcttccctacaacattttacttcactttctcttataccaaacaactaaaacaatcctctca 45223652  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 43229273 - 43229214
Alignment:
Q  14 tctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcc 73  Q
    ||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  43229273 tctttgtttccttcaactttctattccactttctcttataccaaacaactaaaacaatcc 43229214  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 19555227 - 19555285
Alignment:
Q  14 tctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatc 72  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||    
T  19555227 tctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatc 19555285  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 39144533 - 39144466
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatccc 74  Q
    |||| ||||||||||||||| || ||||||||||||||| | || ||||||||||| |||||||||||    
T  39144533 atatggatctttctttcctttaattttctattccactttcttttgtaccaaacaaccaaaacaatccc 39144466  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 4921483 - 4921548
Alignment:
Q  13 atctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||||||||||||| |||||| || |  ||||| | | |||||||||||| |||||||||||||||    
T  4921483 atctttctttcctttaactttttactttactttctttaataccaaacaaccaaaacaatcccctca 4921548  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 16220760 - 16220824
Alignment:
Q  9 atagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcc 73  Q
    |||||||||||||||||| |||||||||||||||||| | |||||||||||| | ||||||||||    
T  16220760 atagatctttctttcctttaactttctattccactttctcttataccaaacatccaaaacaatcc 16220824  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 39566056 - 39566122
Alignment:
Q  12 gatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||||||||||||| ||||||||||||||||||| |  | ||||||||||| |||||||||| ||||    
T  39566056 gatctttctttcctccaactttctattccactttctcgtgtaccaaacaaccaaaacaatcctctca 39566122  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 40917951 - 40917887
Alignment:
Q  10 tagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatccc 74  Q
    |||||||||||||||| ||| |||| | |||||||| ||||| |||||||||| |||||||||||    
T  40917951 tagatctttctttcctccaattttccaatccactttctattaaaccaaacaaccaaaacaatccc 40917887  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 41313044 - 41313111
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatccc 74  Q
    ||||||||||||||||||||  |||||||| | |||||| | |||||||||||||| | |||||||||    
T  41313044 atatagatctttctttcctttcactttctaattcactttctcttataccaaacaaccataacaatccc 41313111  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 13637696 - 13637752
Alignment:
Q  9 atagatctttctttccttcaactttctattccactttttattataccaaacaactaaa 66  Q
    |||||||| |||||||||||||||||| ||||||||| | | ||||||||||||||||    
T  13637696 atagatctatctttccttcaactttct-ttccactttctttgataccaaacaactaaa 13637752  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 13738109 - 13738165
Alignment:
Q  9 atagatctttctttccttcaactttctattccactttttattataccaaacaactaaa 66  Q
    |||||||| |||||||||||||||||| ||||||||| | | ||||||||||||||||    
T  13738109 atagatctatctttccttcaactttct-ttccactttctttgataccaaacaactaaa 13738165  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 3460836 - 3460772
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaat 71  Q
    ||||| |||||||||||||   |||||||| |||||||| | |||||||||||||| | ||||||    
T  3460836 atataaatctttctttcctctcactttctaatccactttctcttataccaaacaaccataacaat 3460772  T

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Target: scaffold0392 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 857 - 928
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||||||||||||||||||||||| ||||| | |||||| | ||||| ||||||||||||||||||| ||||    
T  857 atatagatctttctttccttcaacattctacttcactttctcttatatcaaacaactaaaacaatcctctca 928  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 34516331 - 34516402
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||| ||||||||||||||| ||||||| |||||||||| | |||||||||||||| |||||||||| ||||    
T  34516331 atatggatctttctttcctttaactttccattccactttcttttataccaaacaaccaaaacaatcctctca 34516402  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 6271731 - 6271796
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatc 72  Q
    ||||||||||||||||||||||| |||||| | |||||| | ||| ||||||||||||||||||||    
T  6271731 atatagatctttctttccttcaattttctacttcactttcttttaaaccaaacaactaaaacaatc 6271796  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 24167254 - 24167312
Alignment:
Q  14 tctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatc 72  Q
    |||||||||||| ||||||||||||||| ||| | || ||||||||||| |||| ||||    
T  24167254 tctttctttcctccaactttctattccagtttctcttgtaccaaacaaccaaaataatc 24167312  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 28482697 - 28482759
Alignment:
Q  10 tagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatc 72  Q
    |||||||||||||||| || ||||||||| |||||| | || ||||||| ||| |||||||||    
T  28482697 tagatctttctttcctccatctttctatttcactttctcttgtaccaaataaccaaaacaatc 28482759  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 29795112 - 29795174
Alignment:
Q  10 tagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatc 72  Q
    |||||||||||||||| || ||||||||| |||||| | || ||||||| ||| |||||||||    
T  29795112 tagatctttctttcctccatctttctatttcactttctcttgtaccaaataaccaaaacaatc 29795174  T

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Target: scaffold0294 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 2208 - 2140
Alignment:
Q  10 tagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||||||||||||||| |||||||||||||||||||   || ||||||||||| |||||||||| ||||    
T  2208 tagatctttctttcctccaactttctattccactttcccttgtaccaaacaaccaaaacaatcctctca 2140  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 1047940 - 1047881
Alignment:
Q  14 tctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcc 73  Q
    |||||||||| | ||||||||||||||||||| | || ||||||||||||||||||||||    
T  1047940 tctttctttcttccaactttctattccactttctcttgtaccaaacaactaaaacaatcc 1047881  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 14592083 - 14592142
Alignment:
Q  14 tctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcc 73  Q
    |||||||||||| ||||||||||||||||||| | || ||||||||||| ||||||||||    
T  14592083 tctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaacaatcc 14592142  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 34079979 - 34079908
Alignment:
Q  7 atatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctca 78  Q
    |||| ||| ||||||||||||||||| |||||||| ||| | |||||||||||||| || ||||||||||||    
T  34079979 atatggatatttctttccttcaacttcctattccattttcttttataccaaacaaccaagacaatcccctca 34079908  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 8249065 - 8249000
Alignment:
Q  9 atagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatccc 74  Q
    ||||||||||||||||| ||| ||||   |||||||||||||| |||||||||| |||||||||||    
T  8249065 atagatctttctttcctccaattttccgatccactttttattaaaccaaacaaccaaaacaatccc 8249000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 35950089 - 35950029
Alignment:
Q  14 tctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatccc 74  Q
    ||||||||| || |||||||||||||||| || | || ||||||||||| |||||||||||    
T  35950089 tctttcttttctccaactttctattccacattctcttgtaccaaacaaccaaaacaatccc 35950029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 25018196 - 25018265
Alignment:
Q  8 tatagatctttctttccttcaactttctattccactttttattataccaaacaactaaaacaatcccctc 77  Q
    |||| ||||||||||| ||||||| || | || ||||| | |||||||||||||| |||| |||||||||    
T  25018196 tatatatctttctttctttcaactatccactctactttctcttataccaaacaaccaaaataatcccctc 25018265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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