View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6189_low_8 (Length: 364)
Name: NF6189_low_8
Description: NF6189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6189_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 53031 - 53366
Alignment:
| Q |
18 |
catcacaattgaattaaccacaatgtgcatttcatgacattcatcaaggcttgtagaaaagtttctagaaaatatgaaaaacgataagaatcaaaaagtg |
117 |
Q |
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| T |
53031 |
catcacaattgaattaaccacaatgtgcatttcatgacattcatcaaggcttgtagaaaagtttctagaaaatatgaaaaacgataagaatcaaaaagtg |
53130 |
T |
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| Q |
118 |
attcgaatcatgcctgtcctgactcattggacacatcctaaatctcatgaaggtcactctatcattaatttaaaggacttaaattcatcaagcaattcat |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53131 |
attcgaatcatgcctgtcctaactcattggacacatcctaaatctcatgaaggtcactctatcattaatttaaaggacttaaattcatcaagcaattcat |
53230 |
T |
|
| Q |
218 |
gcatattttcacacaaaaccttaccaactcgatttcatattatgatgcattgtctaggacttcattctatgactttcttctaatttagaaatttaaatta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53231 |
gcatattttcacacaaaaccttaccaactcgatttcatattatgatgcattgtctaggacttcattctatgactttcttctaatttagaaatttaaatta |
53330 |
T |
|
| Q |
318 |
ttcttaaaccaccaactactcactattttggttcat |
353 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
53331 |
ttcttaaaccaccaactactcactattttggttcat |
53366 |
T |
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