View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6189_low_9 (Length: 361)
Name: NF6189_low_9
Description: NF6189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6189_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 312
Target Start/End: Original strand, 33116783 - 33117081
Alignment:
| Q |
14 |
atatcacaagaaatacaaacatgtatgtaccttccataacaagggatgttagtttcagcataaatctgcttgaattgatcaaatgcaccatttctaagtg |
113 |
Q |
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| T |
33116783 |
atatcacaagaaatacaaacatgtatgtaccttccataacaagggatgttagtttcagcataaatctgcttcaattgatcaaatgcaccatttctaagtg |
33116882 |
T |
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| Q |
114 |
tatatgtacacactaaacctgtctttaatcctttcttctgataatgatttgcaaattgtgcacacgttgttgtttttccacaacctgaatttaacattac |
213 |
Q |
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| T |
33116883 |
tatctgtacacactaaacctgtctttaatcctttcttctgataatgatttgcaaattgtgcacacgttgttgtttttccacaacctgaatttaacattac |
33116982 |
T |
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| Q |
214 |
atatagaaattaaattcaaaaacataaacataatgaatataattaacagtaagtaagagtaacaaaccttgagcaccaacaaacatgatgacacttgtt |
312 |
Q |
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| T |
33116983 |
atatagaaattaaattcaaaaacataaacataatgaatataattaacagtaagtaagagtaacaaaccttgagcaccaacaaacatgatggcacttgtt |
33117081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 33168569 - 33168757
Alignment:
| Q |
19 |
acaagaaatacaaacatgtatgtaccttccataacaagggatgttagtttcagcataaatctgcttgaattgatcaaatgcaccatttctaagtgtatat |
118 |
Q |
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| T |
33168569 |
acaacaaatacaaacatgtatgtaccttccattaaaagggatgttagttttggttgaattttgcttcaattgatcaaatgcaccatctctaaatgtatct |
33168668 |
T |
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| Q |
119 |
gtacacactaaacctgtctttaatcctttcttctgataatgatttgcaaattgtgcacacgttgttgtttttccacaacctgaatttaacat |
210 |
Q |
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| T |
33168669 |
gcacaaactactccttcctttaatccttttttctgataataattggcatattgtgtaca---tgttgtttttccacaacctggatttaacat |
33168757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 33159293 - 33159443
Alignment:
| Q |
80 |
tgcttgaattgatcaaatgcaccatttctaagtgtatatgtacacactaaacctgtctttaatcctttcttctgataatgatttgcaaattgtgcacacg |
179 |
Q |
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| T |
33159293 |
tgcttcaattgatcaaatgcaccatctctaaatgcatctgcacaaactactcctgcctttaatccttttttctgataataattgccatattgtgtaca-- |
33159390 |
T |
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| Q |
180 |
ttgttgtttttccacaacctgaatttaacattacatatagaaattaaattcaaa |
233 |
Q |
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| T |
33159391 |
-tgttgtttttccacaacctagatttagcataacatatgataattaaattcaaa |
33159443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 44824083 - 44823920
Alignment:
| Q |
41 |
taccttccataacaagggatgttagtttcagcataaatctgcttgaattgatcaaatgcaccatttctaagtgtatatgtacacactaaacctgtcttta |
140 |
Q |
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| T |
44824083 |
taccttccataaaaagggatcttagctttagtagcattttgcttcaattgatcaaatgcaccagctctaaatgtatctgcacacactaaagctggcttcc |
44823984 |
T |
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| Q |
141 |
atcctttcttctgataatgatttgcaaattgtgcacacgttgttgtttttccacaacctgaatt |
204 |
Q |
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| T |
44823983 |
atcctttcttctgataacaatgcgcatattttgtacatgttgtagtttttccagaacctgaatt |
44823920 |
T |
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