View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6191_high_19 (Length: 325)
Name: NF6191_high_19
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 10772592 - 10772395
Alignment:
| Q |
14 |
attatacttcctgaaatctccaaggaatacgttgttagaataaaacaaaa--tcagagtttttaaaatttttggaatttcgcaatcatattttttacaaa |
111 |
Q |
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| T |
10772592 |
attatacttcctgaaatccccaaggaatacgttgttagaataaaaaaaaaaatcagagtttttaaaatttctgaaatattgcaatcatattttttacaaa |
10772493 |
T |
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| Q |
112 |
tttccagagcataaatcattgaaactttattaaac-aaaatcctaagaatatgtttggatgactaaatttaaataggtaacacaatttttcagggaat |
208 |
Q |
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| T |
10772492 |
tttcccgagcataaatcattgaaactttattaaacaaaaatcttaagaatatgtttggatgaataaatttaaataggtaacacaatttttcagggaat |
10772395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 10772027 - 10771973
Alignment:
| Q |
256 |
atttttaacaatttgttgattatattagtcgacaatgataaataatagttatatt |
310 |
Q |
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| T |
10772027 |
atttttaacaatttgttgattatattagtcgacaataataaataatagttatatt |
10771973 |
T |
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