View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6191_high_20 (Length: 310)
Name: NF6191_high_20
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_high_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 17)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 32786772 - 32786475
Alignment:
| Q |
1 |
ttcaaagccaatgaatgttcatcactctagtagtgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacact |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786772 |
ttcaaagaaaatgaatgttcatcactctagtagtgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacact |
32786673 |
T |
|
| Q |
101 |
cactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786672 |
cactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgctt |
32786573 |
T |
|
| Q |
201 |
cagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786572 |
cagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
32786475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 32306370 - 32306667
Alignment:
| Q |
1 |
ttcaaagccaatgaatgttcatcactctagtagtgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacact |
100 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32306370 |
ttcaaagccagtaaatgctcatcactctagtagtgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatattttgacact |
32306469 |
T |
|
| Q |
101 |
cactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306470 |
cactactatcagagtttgttgagaggaagagggttattgttttctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgctt |
32306569 |
T |
|
| Q |
201 |
cagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306570 |
cagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
32306667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 32310503 - 32310797
Alignment:
| Q |
1 |
ttcaaagccaatgaatgttcatcactctagtagtgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacact |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32310503 |
ttcaaagccaatgaacgttcatcactctaat---gacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacact |
32310599 |
T |
|
| Q |
101 |
cactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32310600 |
cactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgctt |
32310699 |
T |
|
| Q |
201 |
cagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32310700 |
cagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaacctcgatgttttgactggaaatcaaggtcaggttcgtctg |
32310797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 32813980 - 32813686
Alignment:
| Q |
1 |
ttcaaagccaatgaatgttcatcactctagtagtgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacact |
100 |
Q |
| |
|
||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32813980 |
ttcaaagccaatgaatgttcaactctctaat---gacaaagggatgtcatacatgcaagcattgtcatctgcagtaccatctggagcatcttttgacact |
32813884 |
T |
|
| Q |
101 |
cactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32813883 |
cactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttttgcttatgctt |
32813784 |
T |
|
| Q |
201 |
cagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813783 |
cagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
32813686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 28221951 - 28222245
Alignment:
| Q |
1 |
ttcaaagccaatgaatgttcatcactctagtagtgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28221951 |
ttcaaagccaatgaatgttcatcactctaata---acaaagggatgtcatacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacact |
28222047 |
T |
|
| Q |
101 |
cactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
28222048 |
cactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggcttaagagaagactgccatattggtttttgcttatgctt |
28222147 |
T |
|
| Q |
201 |
cagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28222148 |
cagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
28222245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 32564317 - 32564023
Alignment:
| Q |
1 |
ttcaaagccaatgaatgttcatcactctagtagtgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacact |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
32564317 |
ttcaaagccaatgaacgttcatcactctaat---gacaaagggatgtcatacatgcaagcattgtcatctgcagttccatctggagcattttttgacact |
32564221 |
T |
|
| Q |
101 |
cactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32564220 |
cactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgctt |
32564121 |
T |
|
| Q |
201 |
cagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
298 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32564120 |
cagatgacggatctacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgacttgaaatcaaggtcaggttcgtctg |
32564023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 28214333 - 28214039
Alignment:
| Q |
1 |
ttcaaagccaatgaatgttcatcactctagtagtgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28214333 |
ttcaaagccaatgaatgttcatcactctaata---acaaagggatgtcatacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacact |
28214237 |
T |
|
| Q |
101 |
cactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgctt |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |
|
|
| T |
28214236 |
cactactatcagagattgttgagaggaagagggttattgtttgctgatcaacagctgatggctgaagagaagacagccaaattggtttctgcttatgctt |
28214137 |
T |
|
| Q |
201 |
cagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28214136 |
cagatgacggatcaacctttcggatggatttcgcaagggttatgatgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
28214039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 144 - 298
Target Start/End: Complemental strand, 32793012 - 32792858
Alignment:
| Q |
144 |
ctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatggattttgcaagggttat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32793012 |
ctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttat |
32792913 |
T |
|
| Q |
244 |
gttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32792912 |
gttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
32792858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 186 - 298
Target Start/End: Complemental strand, 32799638 - 32799526
Alignment:
| Q |
186 |
tttctgcttatgcttcagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaagg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32799638 |
tttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaagg |
32799539 |
T |
|
| Q |
286 |
tcaggttcgtctg |
298 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32799538 |
tcaggttcgtctg |
32799526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 129 - 298
Target Start/End: Original strand, 28158816 - 28158985
Alignment:
| Q |
129 |
gagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatgga |
228 |
Q |
| |
|
||||| || |||| ||| |||||||||| |||||| |||||| ||||| |||||| |||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
28158816 |
gagggctactgttcgctaatcaacagctcatggctggagagaacactgctagattgatttctgctaatgcttccgatgacggatcaacctttcggatgga |
28158915 |
T |
|
| Q |
229 |
ttttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
298 |
Q |
| |
|
||| |||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28158916 |
tttggcaagggtggtgttgaaattgtctaatattgatgttttgactggaaataaaggtcaggttcgtctg |
28158985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 38 - 298
Target Start/End: Original strand, 28177383 - 28177654
Alignment:
| Q |
38 |
aaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggt--- |
134 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||||||| ||||| |||||| ||||||||| | |||| |||||| || |||||||||||| |
|
|
| T |
28177383 |
aaagtgatgtcaggcatgcaagcgttgtcatctgcagtgtcatcttaagcatcatttgacacttgatgatatccgagtttattaagaggaagaggggagg |
28177482 |
T |
|
| Q |
135 |
--tattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttt |
232 |
Q |
| |
|
|| |||| ||| ||||||||||||||||| ||||| | ||| || ||| |||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28177483 |
gctactgttcgctaatcaacagctgatggctggagagagcagtgctaggttgatttctgctaatgcttccgatgacggatcaacctttcggatggatttt |
28177582 |
T |
|
| Q |
233 |
gcaagggttatgttg------aaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
298 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28177583 |
gcaagggtggtgttggagttcaaattgtctaatcttgatgttttgactggaaatcaaggtcaggttcgtctg |
28177654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 28171757 - 28171825
Alignment:
| Q |
230 |
tttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
298 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28171757 |
tttgcaagggtggtgttgaaattgtctaatgttgatgttttgactggaaatcaaggtcaggttcatctg |
28171825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 28161723 - 28161788
Alignment:
| Q |
233 |
gcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
298 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28161723 |
gcaaggattgtgttgaaattgtctaatattgatgttttgactggaaatcaaggtcaggtttgtctg |
28161788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 32317470 - 32317567
Alignment:
| Q |
1 |
ttcaaagccaatgaatgttcatcactctagtagtgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacact |
100 |
Q |
| |
|
|||||||||||| ||||| |||||||||| || | |||||||| |||||| |||||| ||||||| ||||||||||||| | |||||||||||||| |
|
|
| T |
32317470 |
ttcaaagccaattaatgtccatcactctaataat---aaagggatatcatacgcgcaagctttgtcatatgcagtgccatct-taacatcttttgacact |
32317565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 28158724 - 28158788
Alignment:
| Q |
38 |
aaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacactca |
102 |
Q |
| |
|
|||| |||||||| |||||||| ||||| ||||||||| |||||| |||||| ||||||||||| |
|
|
| T |
28158724 |
aaagtgatgtcatgcatgcaagagttgtcgtctgcagtgtcatctgaagcatcatttgacactca |
28158788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 28169293 - 28169357
Alignment:
| Q |
38 |
aaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacactca |
102 |
Q |
| |
|
|||| |||||||| |||||||| ||||| ||||||||| |||||| |||||| ||||||||||| |
|
|
| T |
28169293 |
aaagtgatgtcatgcatgcaagagttgtcgtctgcagtgtcatctgaagcatcatttgacactca |
28169357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 28183168 - 28183206
Alignment:
| Q |
38 |
aaagggatgtcatacatgcaagcattgtcatctgcagtg |
76 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
28183168 |
aaagggatgtcatacatggaagcgttgtcatctgcagtg |
28183206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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