View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6191_high_23 (Length: 289)

Name: NF6191_high_23
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6191_high_23
NF6191_high_23
[»] chr8 (2 HSPs)
chr8 (17-284)||(38445269-38445537)
chr8 (28-70)||(14020358-14020400)
[»] chr4 (4 HSPs)
chr4 (18-77)||(28496491-28496550)
chr4 (28-71)||(23311462-23311505)
chr4 (28-77)||(32973144-32973193)
chr4 (28-60)||(53738211-53738243)
[»] chr2 (4 HSPs)
chr2 (15-77)||(33145652-33145714)
chr2 (28-75)||(36901211-36901258)
chr2 (28-75)||(36901445-36901492)
chr2 (21-77)||(21374296-21374352)
[»] chr6 (1 HSPs)
chr6 (28-77)||(18286667-18286716)
[»] chr1 (1 HSPs)
chr1 (28-77)||(31789418-31789467)
[»] chr5 (2 HSPs)
chr5 (28-71)||(4796427-4796470)
chr5 (24-77)||(2721814-2721867)
[»] chr7 (3 HSPs)
chr7 (39-77)||(30531573-30531611)
chr7 (28-77)||(41489960-41490009)
chr7 (41-77)||(43295521-43295557)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 38445269 - 38445537
Alignment:
Q  17 acacccttcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaacaggaataagagcaaatcat-gattttaccatattattg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38445269 acacccttcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaacaggaataagagcaaatcattgattttaccatattattg 38445368  T
Q  116 attattgatagtcaagaaaaaggaattatcaattttatgcagttattataagcagaacttcattagcaattagcatatttgttattttagagaatgcttt 215  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38445369 attattgacagtcaagaaaaaggaattatcaattttatgcagttattataagcagaacttcattagcaattagcatatttgttattttagagaatgcttt 38445468  T
Q  216 agcagacagatcaactatggtaaacagcgagaatctcatattattgtgttatttagcattgtctctgct 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38445469 agcagacagatcaactatggtaaacagcgagaatctcatattattgtgttatttagcattgtgtctgct 38445537  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 14020400 - 14020358
Alignment:
Q  28 cttacaagcgagttttgtaaggatgacttaggcacaatataaa 70  Q
    ||||||||| |||||||||||| |||||||||| |||||||||    
T  14020400 cttacaagctagttttgtaaggttgacttaggcccaatataaa 14020358  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 28496550 - 28496491
Alignment:
Q  18 cacccttcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 77  Q
    ||||| ||| |||||||||  ||||||||||||||| |||||| ||||||||||||||||    
T  28496550 cacccctcaccttacaagccggttttgtaaggatgagttaggctcaatataaaaacctaa 28496491  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 23311505 - 23311462
Alignment:
Q  28 cttacaagcgagttttgtaaggatgacttaggcacaatataaaa 71  Q
    |||||||||  |||||||||||||||||||||| ||||||||||    
T  23311505 cttacaagccggttttgtaaggatgacttaggcccaatataaaa 23311462  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 32973144 - 32973193
Alignment:
Q  28 cttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 77  Q
    ||||||||| |||||||||||||||| |||| |  |||||||||||||||    
T  32973144 cttacaagccagttttgtaaggatgagttagaccaaatataaaaacctaa 32973193  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 53738243 - 53738211
Alignment:
Q  28 cttacaagcgagttttgtaaggatgacttaggc 60  Q
    ||||||||| |||||||||||||||||||||||    
T  53738243 cttacaagccagttttgtaaggatgacttaggc 53738211  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 33145714 - 33145652
Alignment:
Q  15 tcacacccttcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 77  Q
    ||||| |||||| |||||||||  |||||||||| |||| |||||| ||||||||||||||||    
T  33145714 tcacaaccttcaccttacaagccggttttgtaagaatgagttaggctcaatataaaaacctaa 33145652  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 36901211 - 36901258
Alignment:
Q  28 cttacaagcgagttttgtaaggatgacttaggcacaatataaaaacct 75  Q
    ||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  36901211 cttacaagccatttttgtaaggatgagttaggcccaatataaaaacct 36901258  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 36901445 - 36901492
Alignment:
Q  28 cttacaagcgagttttgtaaggatgacttaggcacaatataaaaacct 75  Q
    ||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  36901445 cttacaagccatttttgtaaggatgagttaggcccaatataaaaacct 36901492  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 21374296 - 21374352
Alignment:
Q  21 ccttcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 77  Q
    |||||| |||||||||  ||||||||||||||| ||| || ||||||| ||||||||    
T  21374296 ccttcaccttacaagctggttttgtaaggatgaattatgcccaatatacaaacctaa 21374352  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 18286667 - 18286716
Alignment:
Q  28 cttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 77  Q
    ||||||||| | |||||||||||||| |||||| ||||||||||||||||    
T  18286667 cttacaagccaattttgtaaggatgagttaggcccaatataaaaacctaa 18286716  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 31789418 - 31789467
Alignment:
Q  28 cttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 77  Q
    |||||||||  ||||||||||||||| |||||| ||||||||||||||||    
T  31789418 cttacaagccggttttgtaaggatgaattaggcccaatataaaaacctaa 31789467  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 4796427 - 4796470
Alignment:
Q  28 cttacaagcgagttttgtaaggatgacttaggcacaatataaaa 71  Q
    |||||||||| ||||||||||||||| |||||| ||||||||||    
T  4796427 cttacaagcgggttttgtaaggatgagttaggcccaatataaaa 4796470  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 2721814 - 2721867
Alignment:
Q  24 tcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 77  Q
    |||||||||||||  ||||||||||||||| ||||||  ||||| |||||||||    
T  2721814 tcatcttacaagcttgttttgtaaggatgagttaggcctaatatcaaaacctaa 2721867  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 30531611 - 30531573
Alignment:
Q  39 gttttgtaaggatgacttaggcacaatataaaaacctaa 77  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  30531611 gttttgtaaggatgacttagacccaatataaaaacctaa 30531573  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 41489960 - 41490009
Alignment:
Q  28 cttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 77  Q
    |||||||||  |||||||||||||||  ||||| ||||||||||||||||    
T  41489960 cttacaagccggttttgtaaggatgagctaggcccaatataaaaacctaa 41490009  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 43295521 - 43295557
Alignment:
Q  41 tttgtaaggatgacttaggcacaatataaaaacctaa 77  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  43295521 tttgtaaggatgagttaggcccaatataaaaacctaa 43295557  T

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