View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6191_high_29 (Length: 257)
Name: NF6191_high_29
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_high_29 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 43059595 - 43059829
Alignment:
| Q |
23 |
gaactcatggcttcgtggctcttcctctatttccttcgtgatgaaccgtttattgtgtttggaagactcatcagtgatcgtgttgttgtttttccgatgt |
122 |
Q |
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| T |
43059595 |
gaactcatggcttcctggctcttcctctatttccttcgtgatgaaccgtttactgtgtttggaagactcatcagtgatcgtgttgttgtttttccgatgt |
43059694 |
T |
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| Q |
123 |
tgattctcaccgttgtgttcattctctttatcggcacaatcttcaacatattcgttgcggttttcatgtgtgttgttattgttcttcacgctgctttcag |
222 |
Q |
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| T |
43059695 |
tgattctcaccgttgtgttcattctctttatcggcacaatcttcaacatattcgttgcggttttcatgtgtgttgttattgttcttcacgctgctttcag |
43059794 |
T |
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| Q |
223 |
aaacacaaatgattattctatagctgatctattta |
257 |
Q |
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| T |
43059795 |
aaacacaaatgattattctatagctgatctattta |
43059829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 43061914 - 43062025
Alignment:
| Q |
26 |
ctcatggcttcgtggctcttcctctatttccttcgtgatgaaccgtttattgtgtttggaagactcatcagtgatcgtgttgttgtttttccgatgttga |
125 |
Q |
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||||| ||| ||||| | || ||||| || ||||| |||||||| || || | |||||| |||||||||||||||||||| || || | | ||||||| |
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| T |
43061914 |
ctcatagctgcgtggttgtttctctactttcttcgcgatgaacctattgttatctttggacgactcatcagtgatcgtgttattcttgtgcttatgttga |
43062013 |
T |
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| Q |
126 |
ttctcaccgttg |
137 |
Q |
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| T |
43062014 |
ttctcaccgttg |
43062025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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