View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6191_high_30 (Length: 254)

Name: NF6191_high_30
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6191_high_30
NF6191_high_30
[»] chr3 (5 HSPs)
chr3 (85-218)||(5565170-5565302)
chr3 (103-183)||(14175288-14175364)
chr3 (110-147)||(13539487-13539524)
chr3 (185-254)||(31896564-31896633)
chr3 (185-254)||(31945921-31945990)
[»] chr8 (1 HSPs)
chr8 (47-144)||(43618600-43618697)
[»] chr7 (1 HSPs)
chr7 (95-147)||(7854246-7854298)
[»] chr4 (1 HSPs)
chr4 (87-148)||(31952902-31952963)
[»] scaffold0007 (1 HSPs)
scaffold0007 (118-196)||(257658-257735)
[»] scaffold0003 (1 HSPs)
scaffold0003 (202-254)||(42793-42845)
[»] chr6 (1 HSPs)
chr6 (202-254)||(27444516-27444568)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 5565170 - 5565302
Alignment:
Q  85 ttttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcaccac 184  Q
    ||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  5565170 tttttcagccttctcccactaaagtaaaagcatcatagtcttaatctcttcgtcctctac-aaaacccacttgttttccaccacgccggagttgcaccac 5565268  T
Q  185 catcgttgaccatcgcatcggaatttgctcttca 218  Q
    | ||||||||||  || |||||||| ||||||||    
T  5565269 cgtcgttgaccactgcgtcggaattcgctcttca 5565302  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 14175364 - 14175288
Alignment:
Q  103 ctaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcacca 183  Q
    ||||||||||||||||   |||||||| ||||| |||||||||||| |||| ||||||||||||||| |||||||||||||    
T  14175364 ctaaagtaaaagcatc---gtcttcatttcttcgtcctctacaaaa-cccatttgctttccaccacgccggagttgcacca 14175288  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 13539487 - 13539524
Alignment:
Q  110 aaaagcatcatcgtcttcatctcttcatcctctacaaa 147  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  13539487 aaaagcatcattgtcttcatctcttcatcctctgcaaa 13539524  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 31896633 - 31896564
Alignment:
Q  185 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgc 254  Q
    |||||||||||| ||| ||||||| ||||||| | ||| || |||||| |||||| ||||| ||||||||    
T  31896633 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgc 31896564  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 31945990 - 31945921
Alignment:
Q  185 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgc 254  Q
    |||||||||||| ||| ||||||| ||||||| | ||| || |||||| |||||| ||||| ||||||||    
T  31945990 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgc 31945921  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 43618697 - 43618600
Alignment:
Q  47 acacaaaaactcttcttcttattccctcatttcgttaattttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctac 144  Q
    |||||||||| ||||||||||| |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43618697 acacaaaaacccttcttcttatgccctcatttgcttcattttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcttctac 43618600  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 7854246 - 7854298
Alignment:
Q  95 ttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7854246 ttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctgcaaa 7854298  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 31952963 - 31952902
Alignment:
Q  87 ttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaa 148  Q
    |||| |||| ||||||||||| ||||  ||||||| ||||||||||||||||||||||||||    
T  31952963 ttttggcctcctcccactaaaataaagccatcatcatcttcatctcttcatcctctacaaaa 31952902  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 257658 - 257735
Alignment:
Q  118 catcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcaccaccatcgttgacca 196  Q
    |||||||||||| ||||| |||||||| |||||||| ||||||||| ||||| |||||||  |||||  ||||||||||    
T  257658 catcgtcttcatttcttcgtcctctac-aaaacccatttgctttcctccacgccggagttaaaccactgtcgttgacca 257735  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 42845 - 42793
Alignment:
Q  202 tcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgc 254  Q
    ||||||| ||||||| | ||| || ||||||||||||||||||| ||||||||    
T  42845 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgc 42793  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 27444516 - 27444568
Alignment:
Q  202 tcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgc 254  Q
    ||||||| ||||||| | ||| || ||||||||||||||||||| ||||||||    
T  27444516 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgc 27444568  T

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