View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6191_high_35 (Length: 242)
Name: NF6191_high_35
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 1612214 - 1612388
Alignment:
| Q |
11 |
cacagagaataaaaacaaacaaaccaaacacttacgttggcagcatgtgtgttaagtattcagaaacactttttgtgccaagtagataacttctctgcac |
110 |
Q |
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| T |
1612214 |
cacagagaataaaaacaaacaaaccaaacacttacgttggcagcatgtgtgttaagtattcagaaacactttttgtgccaagtagataacttctctgcac |
1612313 |
T |
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| Q |
111 |
aactacaaatactaatctcaatctcttgaatcggatatttaccattttagatacacgttcgtttcatatatatcc |
185 |
Q |
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| T |
1612314 |
aactacaaatactaatctcaatctcttgaatccgatatttaccattttagatacacgttcgtttcatatatatcc |
1612388 |
T |
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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 1612406 - 1612434
Alignment:
| Q |
195 |
ctcatacgtgtgtggagaaatccgcgttt |
223 |
Q |
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| T |
1612406 |
ctcatacgtgtgtggagaaatccgcgttt |
1612434 |
T |
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