View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6191_high_39 (Length: 236)
Name: NF6191_high_39
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_high_39 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 275091 - 274955
Alignment:
| Q |
100 |
gcatctttaagctctaccagctttgcttccaccttctctttcacagagtcgggtaccttttctcccagctctttcaattgcttctcagtctggtagacaa |
199 |
Q |
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| T |
275091 |
gcatctttaagctctaccaactttgcttcaaccttttctttcacagggccaggtaccttttctcctagctctttcaattgcttttcagtctggtagacaa |
274992 |
T |
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| Q |
200 |
cagagtctgcctggttctttgtgtctattgcatccct |
236 |
Q |
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| T |
274991 |
cagagtccgcctgattctttgtgtctattgcatccct |
274955 |
T |
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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 275211 - 275120
Alignment:
| Q |
16 |
gtaggtcctgctacatctgcatctccaggttggttatatagagactgtccaagctgcataacttcctgattgagggcagccatggcatcttt |
107 |
Q |
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| T |
275211 |
gtaggtcctgctgcatctgcagctccgggttggttatatagagactgtccaagctgcataacttcctgattgagggcagccatggcatcttt |
275120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 43618453 - 43618509
Alignment:
| Q |
53 |
atagagactgtccaagctgcataacttcctgattgagggcagccatggcatctttaa |
109 |
Q |
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| T |
43618453 |
atagagactgtccaagctgcataacttcctgattgagggcagccatggcatctttaa |
43618509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 43618536 - 43618599
Alignment:
| Q |
100 |
gcatctttaagctctaccagctttgcttccaccttctctttcacagagtcgggtaccttttctc |
163 |
Q |
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| T |
43618536 |
gcatctttaagctcttccagctttgcttccaccttctctttcacagggctgggtaccttttctc |
43618599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 43617494 - 43617533
Alignment:
| Q |
16 |
gtaggtcctgctacatctgcatctccaggttggttatata |
55 |
Q |
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| T |
43617494 |
gtaggtcctgctgcatctgcagctccaggttggttatata |
43617533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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