View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6191_high_43 (Length: 223)
Name: NF6191_high_43
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_high_43 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 36734440 - 36734247
Alignment:
| Q |
18 |
ttatgttctccattttcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaatttgaccttctcctccaccaac |
117 |
Q |
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| T |
36734440 |
ttatgttctccattttcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaatttgaccttctcctccaccaac |
36734341 |
T |
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| Q |
118 |
ttcctttctcctcctccttacttcttgatgctccttgataatcctctccatcatagaatcaaacctgtccctaatttcctttaaccctttgcta |
211 |
Q |
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| T |
36734340 |
ttcttttctcctcctccttacttcttgatgctccttgataatcctctccatcatagaatcaaacctgtccctaatttcctctaaccctttgcta |
36734247 |
T |
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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 24649 - 24587
Alignment:
| Q |
33 |
tcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaa |
95 |
Q |
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| T |
24649 |
tcaattttatttcactgctctcatcttcatgaatttccaacaaaatatcaagcaaatccttaa |
24587 |
T |
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