View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6191_high_5 (Length: 505)

Name: NF6191_high_5
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6191_high_5
NF6191_high_5
[»] chr1 (18 HSPs)
chr1 (78-321)||(9296214-9296466)
chr1 (359-495)||(9296506-9296642)
chr1 (18-139)||(9301172-9301293)
chr1 (383-492)||(1064937-1065046)
chr1 (207-324)||(31543773-31543888)
chr1 (210-325)||(13467534-13467646)
chr1 (210-325)||(13472528-13472640)
chr1 (210-323)||(19372038-19372150)
chr1 (210-323)||(6200895-6201007)
chr1 (210-323)||(14816972-14817084)
chr1 (210-325)||(31555876-31555988)
chr1 (210-307)||(1065124-1065222)
chr1 (210-323)||(1958699-1958813)
chr1 (210-325)||(2388428-2388540)
chr1 (225-323)||(22430750-22430847)
chr1 (210-317)||(35072414-35072522)
chr1 (210-317)||(2339262-2339370)
chr1 (435-492)||(14816812-14816869)
[»] scaffold1197 (1 HSPs)
scaffold1197 (204-320)||(46-161)
[»] chr6 (21 HSPs)
chr6 (207-325)||(16638005-16638121)
chr6 (210-323)||(16820934-16821047)
chr6 (210-323)||(20456160-20456272)
chr6 (210-325)||(5990231-5990344)
chr6 (210-324)||(18946548-18946661)
chr6 (212-323)||(24146830-24146940)
chr6 (210-323)||(1546107-1546219)
chr6 (214-323)||(27071389-27071497)
chr6 (204-325)||(15649729-15649850)
chr6 (210-323)||(27514190-27514303)
chr6 (224-325)||(28307171-28307268)
chr6 (224-325)||(28355976-28356073)
chr6 (222-323)||(18437706-18437806)
chr6 (210-323)||(18912399-18912511)
chr6 (225-320)||(19716506-19716600)
chr6 (235-323)||(22326783-22326871)
chr6 (210-323)||(619282-619396)
chr6 (230-325)||(16582987-16583080)
chr6 (230-325)||(16612300-16612393)
chr6 (210-325)||(27054988-27055101)
chr6 (225-306)||(20044032-20044112)
[»] chr5 (19 HSPs)
chr5 (207-325)||(24961431-24961547)
chr5 (207-325)||(28847628-28847744)
chr5 (210-323)||(12391355-12391468)
chr5 (212-323)||(1802151-1802261)
chr5 (210-325)||(25529465-25529578)
chr5 (210-307)||(29897505-29897601)
chr5 (210-325)||(11810074-11810186)
chr5 (210-325)||(12177228-12177340)
chr5 (210-325)||(21864078-21864193)
chr5 (210-325)||(26085998-26086110)
chr5 (211-325)||(27230282-27230392)
chr5 (210-324)||(20096779-20096891)
chr5 (225-323)||(21691842-21691939)
chr5 (210-325)||(21992484-21992596)
chr5 (210-323)||(7258092-7258206)
chr5 (211-325)||(20380807-20380917)
chr5 (210-324)||(36451093-36451206)
chr5 (210-325)||(33841578-33841690)
chr5 (210-254)||(37581653-37581697)
[»] chr2 (12 HSPs)
chr2 (207-325)||(35142435-35142551)
chr2 (207-325)||(20614552-20614668)
chr2 (207-325)||(42570766-42570882)
chr2 (214-324)||(20278206-20278315)
chr2 (228-321)||(15949294-15949385)
chr2 (204-323)||(24693250-24693368)
chr2 (246-325)||(24288984-24289061)
chr2 (281-325)||(25498517-25498561)
chr2 (210-325)||(16277299-16277412)
chr2 (211-325)||(30689561-30689671)
chr2 (217-321)||(21116852-21116953)
chr2 (210-325)||(3762686-3762798)
[»] scaffold0002 (1 HSPs)
scaffold0002 (207-325)||(125561-125677)
[»] chr7 (20 HSPs)
chr7 (207-325)||(13835232-13835348)
chr7 (210-323)||(23882719-23882832)
chr7 (210-325)||(4944539-4944652)
chr7 (210-325)||(38413439-38413551)
chr7 (210-323)||(15770072-15770184)
chr7 (210-325)||(565822-565933)
chr7 (210-321)||(34136235-34136345)
chr7 (210-317)||(842588-842695)
chr7 (210-317)||(849764-849871)
chr7 (210-317)||(1207768-1207875)
chr7 (210-324)||(13267875-13267988)
chr7 (210-325)||(3427816-3427931)
chr7 (210-325)||(5205799-5205912)
chr7 (210-325)||(27972934-27973047)
chr7 (210-323)||(42634397-42634511)
chr7 (223-323)||(16269437-16269536)
chr7 (210-323)||(8814468-8814582)
chr7 (242-321)||(16486196-16486273)
chr7 (210-325)||(27437801-27437914)
chr7 (240-323)||(12587710-12587793)
[»] chr4 (15 HSPs)
chr4 (207-325)||(8099348-8099464)
chr4 (210-325)||(14874155-14874268)
chr4 (210-323)||(16365009-16365122)
chr4 (210-323)||(22708181-22708294)
chr4 (210-320)||(3385667-3385776)
chr4 (210-323)||(12512283-12512395)
chr4 (210-322)||(9187688-9187798)
chr4 (210-321)||(14921605-14921715)
chr4 (211-321)||(15570906-15571015)
chr4 (211-321)||(15575034-15575143)
chr4 (225-323)||(16723976-16724073)
chr4 (282-323)||(3832006-3832047)
chr4 (210-278)||(12509309-12509377)
chr4 (210-254)||(15898750-15898794)
chr4 (204-323)||(20557199-20557320)
[»] chr3 (29 HSPs)
chr3 (207-325)||(41002112-41002228)
chr3 (207-325)||(41010894-41011010)
chr3 (210-323)||(8808554-8808667)
chr3 (210-323)||(21611983-21612096)
chr3 (210-323)||(11184203-11184316)
chr3 (210-324)||(30092981-30093093)
chr3 (210-323)||(12476225-12476337)
chr3 (222-323)||(46396627-46396727)
chr3 (210-324)||(23285256-23285369)
chr3 (210-323)||(14421591-14421704)
chr3 (210-325)||(8609027-8609143)
chr3 (222-325)||(3241636-3241737)
chr3 (210-324)||(13108920-13109033)
chr3 (212-323)||(15533255-15533365)
chr3 (210-306)||(70976-71072)
chr3 (211-325)||(26383401-26383516)
chr3 (212-323)||(8620472-8620582)
chr3 (210-317)||(33568697-33568803)
chr3 (210-323)||(6198431-6198544)
chr3 (210-325)||(25267305-25267416)
chr3 (210-325)||(10718923-10719036)
chr3 (222-324)||(14395164-14395265)
chr3 (225-323)||(15623714-15623811)
chr3 (210-324)||(27884281-27884392)
chr3 (210-325)||(3680529-3680644)
chr3 (246-325)||(8201790-8201867)
chr3 (210-325)||(30017098-30017213)
chr3 (216-306)||(14884508-14884597)
chr3 (225-325)||(17929635-17929731)
[»] scaffold0027 (1 HSPs)
scaffold0027 (228-325)||(59705-59800)
[»] scaffold0183 (1 HSPs)
scaffold0183 (210-321)||(32563-32674)
[»] scaffold0004 (1 HSPs)
scaffold0004 (211-323)||(191426-191537)
[»] chr8 (11 HSPs)
chr8 (210-325)||(17679182-17679295)
chr8 (210-325)||(39841833-39841946)
chr8 (225-325)||(6666813-6666915)
chr8 (210-323)||(32003031-32003143)
chr8 (225-320)||(25856446-25856540)
chr8 (210-323)||(21479317-21479431)
chr8 (225-310)||(24703031-24703115)
chr8 (210-323)||(20736965-20737077)
chr8 (210-323)||(20741834-20741946)
chr8 (210-323)||(20745523-20745635)
chr8 (217-323)||(22092589-22092695)
[»] scaffold0357 (1 HSPs)
scaffold0357 (210-323)||(9613-9726)
[»] scaffold0600 (1 HSPs)
scaffold0600 (210-323)||(9258-9370)
[»] scaffold0435 (1 HSPs)
scaffold0435 (210-323)||(11818-11931)
[»] scaffold0582 (1 HSPs)
scaffold0582 (210-323)||(4413-4525)
[»] scaffold0202 (1 HSPs)
scaffold0202 (210-325)||(24458-24572)
[»] scaffold0605 (1 HSPs)
scaffold0605 (224-325)||(4906-5004)
[»] scaffold0327 (1 HSPs)
scaffold0327 (210-325)||(14988-15103)
[»] scaffold0320 (1 HSPs)
scaffold0320 (210-324)||(3471-3584)
[»] scaffold0306 (1 HSPs)
scaffold0306 (210-324)||(18456-18569)
[»] scaffold0155 (1 HSPs)
scaffold0155 (210-321)||(19788-19898)
[»] scaffold0138 (1 HSPs)
scaffold0138 (212-323)||(11410-11520)
[»] scaffold0157 (2 HSPs)
scaffold0157 (210-323)||(8512-8624)
scaffold0157 (210-278)||(11100-11168)
[»] scaffold0031 (1 HSPs)
scaffold0031 (226-325)||(28515-28612)
[»] scaffold0441 (1 HSPs)
scaffold0441 (210-321)||(7218-7329)
[»] scaffold0132 (1 HSPs)
scaffold0132 (210-322)||(32104-32214)
[»] scaffold0019 (1 HSPs)
scaffold0019 (240-323)||(16746-16828)
[»] scaffold0009 (2 HSPs)
scaffold0009 (215-325)||(153017-153126)
scaffold0009 (359-470)||(154344-154448)
[»] scaffold0068 (1 HSPs)
scaffold0068 (225-323)||(21971-22068)
[»] scaffold0001 (1 HSPs)
scaffold0001 (210-320)||(99727-99836)
[»] scaffold0362 (1 HSPs)
scaffold0362 (210-317)||(775-882)
[»] scaffold0114 (1 HSPs)
scaffold0114 (225-320)||(30802-30896)
[»] scaffold0044 (1 HSPs)
scaffold0044 (207-325)||(70744-70859)
[»] scaffold0015 (1 HSPs)
scaffold0015 (210-323)||(165957-166070)
[»] scaffold0029 (1 HSPs)
scaffold0029 (210-321)||(75424-75535)
[»] scaffold0016 (1 HSPs)
scaffold0016 (281-325)||(19535-19579)
[»] scaffold0005 (1 HSPs)
scaffold0005 (204-307)||(302238-302341)
[»] scaffold0243 (1 HSPs)
scaffold0243 (290-323)||(17796-17829)
[»] scaffold0125 (1 HSPs)
scaffold0125 (210-278)||(12496-12565)
[»] scaffold0023 (1 HSPs)
scaffold0023 (210-263)||(142552-142605)
[»] scaffold0014 (1 HSPs)
scaffold0014 (210-278)||(183384-183453)
[»] scaffold0551 (1 HSPs)
scaffold0551 (210-254)||(9357-9401)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 78 - 321
Target Start/End: Original strand, 9296214 - 9296466
Alignment:
Q  78 agacaaagaagctttgattaaagataccgttacaatccgacaatttaataatctaaata---------gtacgttcacaggtgctctaaaaacaatatta 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||| ||| |||| ||||||| |||||||    
T  9296214 agacaaagaagctttgattaaagataccgttacaatccgacaatttaataatctaaataatctaaatagtacgttaacaagtgccctaaaaataatatta 9296313  T
Q  169 ataaaatgggttacgtttcccgtttttcnnnnnnntcattccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccatt 268  Q
    |||||||||||||||||||  |||||||       |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||     
T  9296314 ataaaatgggttacgtttcttgtttttcaaaaaaatcattccgtcccgctcgcgacgaaagtgaatttgtgtagggttttttacttcatgtatttccatc 9296413  T
Q  269 attaataaaatgggtcgttttgatcccgactttatttttattttgtgcttttt 321  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  9296414 attaataaaatgggttgttttgatcccgactttgtttttattttgtgcttttt 9296466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 359 - 495
Target Start/End: Original strand, 9296506 - 9296642
Alignment:
Q  359 gaataatcttgtacaaatgtctagatacaatcattcacttactaaaatcaaacaaaaatcatatatgcagattaaacattgataaacccgtttaacacct 458  Q
    |||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9296506 gaataatcttgtccaaatgtctagatacaatcattcagaaactaaaatcaaacaaaaatcatatatgcagattaaacattgataaacccgtttaacacct 9296605  T
Q  459 tacccatgtactttctccaaacattgagttccctatg 495  Q
    || ||||||||||||||||||||||||||||||||||    
T  9296606 taaccatgtactttctccaaacattgagttccctatg 9296642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 9301293 - 9301172
Alignment:
Q  18 taaacatgctctgtaatcattcaccaatgaaagtagcaattatgcatcacttttggtaaaagacaaagaagctttgattaaagataccgttacaatccga 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||| ||||||||||||||    
T  9301293 taaacatgctttgtaatcattcaccaatgaaagtagcaattatgcatcacatttggtaaaagacaaagaagcttctattaaagatgccgttacaatccga 9301194  T
Q  118 caatttaataatctaaatagta 139  Q
     |||||||||||||||| ||||    
T  9301193 gaatttaataatctaaaaagta 9301172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 383 - 492
Target Start/End: Complemental strand, 1065046 - 1064937
Alignment:
Q  383 atacaatcattcacttactaaaatcaaacaaaaatcatatatgcagattaaacattgataaacccgtttaacaccttacccatgtactttctccaaacat 482  Q
    |||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||| || || ||| ||||||| |  |||| ||  |    
T  1065046 atacaatcattcacttgctaaaatcaaacattaatcatatatgcagattaaacattgataaacccgttgaaaactttaaccatgtaatccctcccaaatt 1064947  T
Q  483 tgagttccct 492  Q
    ||||||||||    
T  1064946 tgagttccct 1064937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 324
Target Start/End: Original strand, 31543773 - 31543888
Alignment:
Q  207 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||| |||| | | ||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || ||||    
T  31543773 ttccgtcccacccgaggcaaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttt 31543870  T
Q  307 tattttgtgctttttctg 324  Q
    |||||| |||||||||||    
T  31543871 tattttttgctttttctg 31543888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 13467534 - 13467646
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| ||  ||||||    
T  13467534 cgtcccacccgaggcgaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgacctt-gttttat 13467630  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  13467631 tttgtgctttttctgg 13467646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 13472528 - 13472640
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| ||  ||||||    
T  13472528 cgtcccacccgaggcgaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgacctt-gttttat 13472624  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  13472625 tttgtgctttttctgg 13472640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 19372038 - 19372150
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| |||||||||||||||||||| | | |||  ||| ||||||||||  ||||||||||||||| ||||| |||| ||    
T  19372038 cgtcccgcccgagatgaaagtgaacttgtgtagggctttttgctttaagaattgtcatcattaataaaa-aggtcgttttgatccctactttgttttcat 19372136  T
Q  310 tttgtgctttttct 323  Q
    ||||||||| ||||    
T  19372137 tttgtgcttcttct 19372150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 6201007 - 6200895
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||||||||||  ||||| |||||||||||||||  |||| |    
T  6201007 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaa-aggtcgctttgatcccgactttgcttttgt 6200909  T
Q  310 tttgtgctttttct 323  Q
    ||||||||||||||    
T  6200908 tttgtgctttttct 6200895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 14817084 - 14816972
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| |||||||||| ||||||||| | | |||  ||| ||||||||||  ||||||||||||| ||||||| |||| ||    
T  14817084 cgtcccgcccgagatgaaagtgaacttgtgtagggttttttgctttaagaattgtcatcattaataaaa-aggtcgttttgatctcgactttgttttcat 14816986  T
Q  310 tttgtgctttttct 323  Q
    |||| |||||||||    
T  14816985 tttgcgctttttct 14816972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 31555876 - 31555988
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||| ||||||||||| ||||| ||||||||| |||||||| ||| |||| | |||  |||||| ||||||||||||||  ||||||    
T  31555876 cgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa--ggtcgtcttgatcccgacttt-gttttat 31555972  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  31555973 tttgtgctttttctgg 31555988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 1065222 - 1065124
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggcttttt-gcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttattttt 307  Q
    ||||||||||| ||||||||| || ||||||| || ||||| ||||||||||||||||| || |||||||   ||| |||||||||||||||| |||||    
T  1065222 cgtcccgcccgagacgaaagtaaacttgtgtatggtttttttgcttcatgtatttccatcatcaataaaaaaagtctttttgatcccgactttgttttt 1065124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 1958699 - 1958813
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtattt-ccattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||| ||| || |||||  || |||| |||||| |||||||||| | |||| |||| ||||||||||   |||||||||||||||||||| |||| |    
T  1958699 cgtcccgtccgagatgaaagcaaacttgtttagggcattttgcttcaagcattttccatcattaataaaaatagtcgttttgatcccgactttgttttca 1958798  T
Q  309 ttttgtgctttttct 323  Q
    |||||||||||||||    
T  1958799 ttttgtgctttttct 1958813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 2388428 - 2388540
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| |  |||||||| ||  ||||||    
T  2388428 cgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtctcaatcccgacctt-gttttat 2388524  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  2388525 tttgtgctttttctgg 2388540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 22430750 - 22430847
Alignment:
Q  225 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 323  Q
    ||||||||| | ||||||| |||||||||| | | |||  |||||||||||||| || ||||||||||||||  ||| |||||||||||||||| ||||    
T  22430750 gaaagtgaactggtgtaggactttttgctttaagaattgtcattattaataaaaagg-tcgttttgatcccgtttttgtttttattttgtgcttcttct 22430847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 317
Target Start/End: Original strand, 35072414 - 35072522
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatg-ggtcgttttgatcccgactttattttta 308  Q
    ||||||||||  |||||||||||| || ||||||||| ||||||||||| |||  ||| |||||||||| |  ||||| ||||||||||| ||  |||||    
T  35072414 cgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatgaattgtcatcattaataaaaagaagtcgtcttgatcccgaccttgctttta 35072513  T
Q  309 ttttgtgct 317  Q
    |||| ||||    
T  35072514 ttttatgct 35072522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 317
Target Start/End: Complemental strand, 2339370 - 2339262
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaat-aaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||||||  |||||||||||| || ||||||||| ||||||||||| |||   || |||||| ||||  |||||| ||||||||||| ||  |||||    
T  2339370 cgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatgaattgttatcattaataaaaaaaggtcgtcttgatcccgaccttgctttta 2339271  T
Q  309 ttttgtgct 317  Q
    |||| ||||    
T  2339270 ttttatgct 2339262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 492
Target Start/End: Complemental strand, 14816869 - 14816812
Alignment:
Q  435 cattgataaacccgtttaacaccttacccatgtactttctccaaacattgagttccct 492  Q
    |||| ||||||||||| ||||| ||| ||||||||| ||||| ||| |||||||||||    
T  14816869 cattaataaacccgttgaacacattaaccatgtactctctcccaactttgagttccct 14816812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 204 - 320
Target Start/End: Original strand, 46 - 161
Alignment:
Q  204 tcattccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttat 303  Q
    ||||| ||||||||||| || ||||||||| | |||||||||||||||||||||| |||  ||| ||||||||||  ||||||||||||||||||||| |    
T  46 tcatttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgcttcatgcattgtcatcattaataaaa-aggtcgttttgatcccgactttgt 144  T
Q  304 ttttattttgtgctttt 320  Q
    ||| |||||||||||||    
T  145 tttcattttgtgctttt 161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 16638005 - 16638121
Alignment:
Q  207 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| |||||||    
T  16638005 ttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttatttt 16638102  T
Q  307 tattttgtgctttttctgg 325  Q
    |||||||||||| ||||||    
T  16638103 tattttgtgcttattctgg 16638121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 16821047 - 16820934
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||| ||||||  |||||||||||||||||||||  ||||||    
T  16821047 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgcttttat 16820948  T
Q  310 tttgtgctttttct 323  Q
    ||||||||||||||    
T  16820947 tttgtgctttttct 16820934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 20456272 - 20456160
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| |||||||||||||||||||| | | |||  ||| ||||||||||  |||| |||||||||||||||| |||| ||    
T  20456272 cgtcccgcccgagatgaaagtgaacttgtgtagggctttttgctttaagaattatcatcattaataaaa-aggtcattttgatcccgactttgttttcat 20456174  T
Q  310 tttgtgctttttct 323  Q
    ||||||||| ||||    
T  20456173 tttgtgcttcttct 20456160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 5990231 - 5990344
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||  |||||| |||| || |||||||    
T  5990231 cgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgccttgatctcgaccttgtttttat 5990328  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  5990329 tttgtgctttttctgg 5990344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 18946661 - 18946548
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatt-tccattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||||||| || ||||||||  |||||||||||||||||||| | |||||   ||| ||||||||||  ||||||||||| |||||||||| |||||    
T  18946661 cgtcccgcccgagatgaaagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaa-aggtcgttttgagcccgacttta-tttta 18946564  T
Q  309 ttttgtgctttttctg 324  Q
    ||||||||||||||||    
T  18946563 ttttgtgctttttctg 18946548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 212 - 323
Target Start/End: Complemental strand, 24146940 - 24146830
Alignment:
Q  212 tcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattt 311  Q
    ||||||||  || ||||||||| | |||||||||||||||||| | |  ||  ||| |||||||||| || |||||||||||||||||||||||| ||||    
T  24146940 tcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaagg-tcgttttgatcccgactttattttcattt 24146842  T
Q  312 tgtgctttttct 323  Q
    ||||||||||||    
T  24146841 tgtgctttttct 24146830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 1546107 - 1546219
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| ||  |||||||| | | |||||||||||||||| | | |||  ||| |||||||||| || ||||||||||||| |||||||||||||    
T  1546107 cgtcccgcccgagataaaagtgaactggggtagggctttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccaactttatttttat 1546205  T
Q  310 tttgtgctttttct 323  Q
    ||||||||| ||||    
T  1546206 tttgtgcttcttct 1546219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 214 - 323
Target Start/End: Complemental strand, 27071497 - 27071389
Alignment:
Q  214 ccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttg 313  Q
    ||||||| |||||||||||| |||||||||||||||||||| | | |||  ||| ||||||||||   |||||||||||||||||||| |||| | ||||    
T  27071497 ccgcccgagacgaaagtgaacttgtgtagggctttttgctttaagaattgtcatcattaataaaa-aagtcgttttgatcccgactttgttttcactttg 27071399  T
Q  314 tgctttttct 323  Q
    ||||| ||||    
T  27071398 tgcttcttct 27071389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 15649850 - 15649729
Alignment:
Q  204 tcattccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgg-gtcgttttgatcccgacttta 302  Q
    ||||| |||||| | || |||||||||||| |||| |||| |||||||||| ||| |||||||| ||||||||||    ||||||||||||||||||||     
T  15649850 tcatttcgtcccacgcgagacgaaagtgaacttgtttaggactttttgctttatgcatttccatcattaataaaaaaaagtcgttttgatcccgacttt- 15649752  T
Q  303 tttttattttgtgctttttctgg 325  Q
     ||||| ||||| ||||||||||    
T  15649751 gttttactttgtactttttctgg 15649729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 27514190 - 27514303
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | | ||  | | |||||||||| || |||||||||||||||||||  |||||    
T  27514190 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcctcattaataaaaagg-tcgttttgatcccgactttgctttta 27514288  T
Q  309 ttttgtgctttttct 323  Q
    |||||||||||||||    
T  27514289 ttttgtgctttttct 27514303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 325
Target Start/End: Original strand, 28307171 - 28307268
Alignment:
Q  224 cgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 323  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||| |||| | |||  |||||  ||||||||||||||  ||||||||||||||||||||    
T  28307171 cgaaagtgaatttgtttagggctttttgctttatgtattttcatcattagtgaaa--ggtcg-cttgatcccgacttt-gttttattttgtgctttttct 28307266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 325
Target Start/End: Original strand, 28355976 - 28356073
Alignment:
Q  224 cgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 323  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||| |||| | |||  |||||  ||||||||||||||  ||||||||||||||||||||    
T  28355976 cgaaagtgaatttgtttagggctttttgctttatgtattttcatcattagtgaaa--ggtcg-cttgatcccgacttt-gttttattttgtgctttttct 28356071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 323
Target Start/End: Original strand, 18437706 - 18437806
Alignment:
Q  222 gacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgcttttt 321  Q
    |||||||||||| || ||||||||||||||||| | | |||   || |||||||||| || ||||||||||||||||||| |||| ||||||||||| ||    
T  18437706 gacgaaagtgaacttatgtagggctttttgctttaagcattgttatcattaataaaaagg-tcgttttgatcccgactttgttttcattttgtgcttctt 18437804  T
Q  322 ct 323  Q
    ||    
T  18437805 ct 18437806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 18912399 - 18912511
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||  ||| |||||||| || ||||||||| ||||||||||| |||  ||| ||||||||| |   |||||||||||||||||||  ||||||    
T  18912399 cgtcccgcccaagacaaaagtgaacttatgtagggctctttgcttcatgaattgtcatcattaataaa-tatatcgttttgatcccgactttgattttat 18912497  T
Q  310 tttgtgctttttct 323  Q
    ||| ||||||||||    
T  18912498 tttatgctttttct 18912511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 19716506 - 19716600
Alignment:
Q  225 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttt 320  Q
    ||||||||| | |||||||||||||||||| | | |||  ||| |||||||||| || ||||||||||||||||||  |||| |||||||||||||    
T  19716506 gaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccgacttggttttcattttgtgctttt 19716600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 323
Target Start/End: Original strand, 22326783 - 22326871
Alignment:
Q  235 ttgtgtagggctttttgcttcatgtattt-ccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 323  Q
    |||| |||||| |||||||||| | |||| |||| ||||||||||  | ||||||||||||||||||| |||| ||||||||||||||||    
T  22326783 ttgtttagggcattttgcttcaagcattttccatcattaataaaaaag-tcgttttgatcccgactttgttttcattttgtgctttttct 22326871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 619396 - 619282
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgtttt-gatcccgactttattttt 307  Q
    ||||||||||| || ||||||||| | |||||||||||||| ||| | | | ||  ||| |||||||||| || ||||||| ||||||||||||  ||||    
T  619396 cgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaagg-tcgtttttgatcccgactttgctttt 619298  T
Q  308 attttgtgctttttct 323  Q
    ||||||||||||||||    
T  619297 attttgtgctttttct 619282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 16582987 - 16583080
Alignment:
Q  230 tgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttctgg 325  Q
    ||||||||| ||| ||||||||||| |||||||| ||| |||||| |||| |||||| | | ||||||| ||  ||||||||||||||||||||||    
T  16582987 tgaatttgtttagagctttttgctttatgtattttcatcattaatgaaat-ggtcgtctcggtcccgacctt-gttttattttgtgctttttctgg 16583080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 325
Target Start/End: Complemental strand, 16612393 - 16612300
Alignment:
Q  230 tgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttctgg 325  Q
    ||||||||| ||| ||||||||||| |||||||| ||| |||||| |||| |||||| | | ||||||| ||  ||||||||||||||||||||||    
T  16612393 tgaatttgtttagagctttttgctttatgtattttcatcattaatgaaat-ggtcgtctcggtcccgacctt-gttttattttgtgctttttctgg 16612300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 27055101 - 27054988
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| |||| ||||||| |||| ||||||||||||||  || ||||| ||| |||||| |||  |||||| ||| ||||||| ||  ||||||    
T  27055101 cgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaa-aggtcgtcttggtcccgacctt-cttttat 27055004  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  27055003 tttgtgctttttctgg 27054988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 20044112 - 20044032
Alignment:
Q  225 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||| | ||||||||||||||| || | |  ||  ||| |||||||||| || ||||||||||||||||||||||||    
T  20044112 gaaagtgaactagtgtagggctttttgttttaagatttgtcatcattaataaaaagg-tcgttttgatcccgactttatttt 20044032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 24961547 - 24961431
Alignment:
Q  207 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||| |||| | ||||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || ||||    
T  24961547 ttccgtcccacccgaggcgaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttt 24961450  T
Q  307 tattttgtgctttttctgg 325  Q
    |||||| ||||||||||||    
T  24961449 tattttttgctttttctgg 24961431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 28847628 - 28847744
Alignment:
Q  207 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| |  ||||    
T  28847628 ttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgacctcgtttt 28847725  T
Q  307 tattttgtgctttttctgg 325  Q
    |||||||||||||||||||    
T  28847726 tattttgtgctttttctgg 28847744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 12391468 - 12391355
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||| ||||||  |||||||||||||||||||||  ||||||    
T  12391468 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgcttttat 12391369  T
Q  310 tttgtgctttttct 323  Q
    ||||||||||||||    
T  12391368 tttgtgctttttct 12391355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 212 - 323
Target Start/End: Original strand, 1802151 - 1802261
Alignment:
Q  212 tcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattt 311  Q
    ||||||||  || ||||||||| | |||||||||||||||||| | |  ||  ||| |||||||||| || |||||||||||||||||||||||| ||||    
T  1802151 tcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaagg-tcgttttgatcccgactttattttcattt 1802249  T
Q  312 tgtgctttttct 323  Q
    ||||||||||||    
T  1802250 tgtgctttttct 1802261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 25529465 - 25529578
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||| ||||| || | ||||||| |||||||||||||||||||| | | |||  ||| ||||||||||  |||||||||||||||||||||  ||||||    
T  25529465 cgtcctgcccgagatgtaagtgaacttgtgtagggctttttgctttaagaattgtcatcattaataaaa-aggtcgttttgatcccgacttt-gttttat 25529562  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  25529563 tttgtgctttttctgg 25529578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 29897505 - 29897601
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttattttt 307  Q
    ||||||||||  |||||||||||| || ||||||||||||||||||||| | |  ||| ||||||||||  ||||||||||||||||||||| |||||    
T  29897505 cgtcccgcccaagacgaaagtgaacttatgtagggctttttgcttcatgaactgtcatcattaataaaa-aggtcgttttgatcccgactttgttttt 29897601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 11810186 - 11810074
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||| ||||||||||| ||||| ||||||||| |||||||| ||| |||| | |||  |||||| ||||||||||||||  ||||||    
T  11810186 cgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa--ggtcgtcttgatcccgacttt-gttttat 11810090  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  11810089 tttgtgctttttctgg 11810074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 12177340 - 12177228
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||| ||||||||||| ||||| ||||||||| |||||||| ||| |||| | |||  |||||| ||||||||||||||  ||||||    
T  12177340 cgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa--ggtcgtcttgatcccgacttt-gttttat 12177244  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  12177243 tttgtgctttttctgg 12177228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 21864193 - 21864078
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggcttttt-gcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    |||||| |||| |||| |||||||||||| ||||||||||| |||| |||||||| ||| |||||| |||  | ||| |||| | |||||||| ||||||    
T  21864193 cgtcccacccgagacggaagtgaatttgtttagggcttttttgctttatgtattttcatcattaattaaaaag-tcgctttgtttccgactttgttttta 21864095  T
Q  309 ttttgtgctttttctgg 325  Q
    |||||||||||||||||    
T  21864094 ttttgtgctttttctgg 21864078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 26086110 - 26085998
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||| ||||||||||| ||||| ||||||||| |||||||| ||| |||| | |||  |||||| ||||||||||||||  ||||||    
T  26086110 cgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa--ggtcgtcttgatcccgacttt-gttttat 26086014  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  26086013 tttgtgctttttctgg 26085998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 211 - 325
Target Start/End: Complemental strand, 27230392 - 27230282
Alignment:
Q  211 gtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttatt 310  Q
    ||||| |||| ||||||||||||||  | ||||||||||||||| |||||||| ||| |||||| |||  |||||  ||||||||||||||  |||||||    
T  27230392 gtcccccccgagacgaaagtgaattcatctagggctttttgctttatgtattttcatcattaatgaaa--ggtcg-cttgatcccgacttt-gttttatt 27230297  T
Q  311 ttgtgctttttctgg 325  Q
    |||||||||||||||    
T  27230296 ttgtgctttttctgg 27230282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 20096891 - 20096779
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||||||| || ||||||||  |||||||||||||||| ||| | |||||   ||| ||||| |||| || |||||||||||||||||||| |||||    
T  20096891 cgtcccgcccgagatgaaagtgatcttgtgtagggcttttt-ctttaagtattggtcatcattaacaaaaagg-tcgttttgatcccgacttta-tttta 20096795  T
Q  309 ttttgtgctttttctg 324  Q
    ||||||||||||||||    
T  20096794 ttttgtgctttttctg 20096779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 21691842 - 21691939
Alignment:
Q  225 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 323  Q
    ||||||||| | |||||||||||||||||| | | |||  ||| |||||||||| || ||||||||||||||||||| |||| | ||||||||| ||||    
T  21691842 gaaagtgaactggtgtagggctttttgcttaaagaattgtcatcattaataaaaagg-tcgttttgatcccgactttgttttcactttgtgcttcttct 21691939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 21992596 - 21992484
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||| ||||||||||| ||||| ||||||||| |||||||| ||| |||| | |||  |||||| | ||||||||| ||  ||||||    
T  21992596 cgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa--ggtcgtctcgatcccgacctt-gttttat 21992500  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  21992499 tttgtgctttttctgg 21992484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 7258206 - 7258092
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgtttt-gatcccgactttattttt 307  Q
    ||||||||||| || ||||||||| | |||||||||||||| ||| | | | ||  ||| |||||||||| || ||||||| ||||||||||||  ||||    
T  7258206 cgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaagg-tcgtttttgatcccgactttgctttt 7258108  T
Q  308 attttgtgctttttct 323  Q
    ||||||||||||||||    
T  7258107 attttgtgctttttct 7258092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 325
Target Start/End: Original strand, 20380807 - 20380917
Alignment:
Q  211 gtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttatt 310  Q
    ||||| |||| || |||||||||||  | ||||||||||||||| |||||||| ||| |||| | |||  |||||  ||||||||||||||  |||||||    
T  20380807 gtcccacccgagatgaaagtgaattcatctagggctttttgctttatgtattttcatcattagtgaaa--ggtcg-cttgatcccgacttt-gttttatt 20380902  T
Q  311 ttgtgctttttctgg 325  Q
    |||||||||||||||    
T  20380903 ttgtgctttttctgg 20380917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 324
Target Start/End: Original strand, 36451093 - 36451206
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||||| | || |||| |||  |||||||||||||||||||| | |||||   |||  ||||||||| || ||||||| |||||||||||| |||||    
T  36451093 cgtcccgcctgagatgaaattgatcttgtgtagggctttttgctttaagtattggtcatctttaataaaaagg-tcgttttaatcccgacttta-tttta 36451190  T
Q  309 ttttgtgctttttctg 324  Q
    ||||||||||||||||    
T  36451191 ttttgtgctttttctg 36451206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 33841690 - 33841578
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| |||| || |||| |||| |||||||||||||||   |||||| ||| |||||| ||| || ||| || |||||||||||| |||| ||    
T  33841690 cgtcccacccgagacggaattgaacttgtttagggctttttgcttttcgtattttcatcattaatgaaaagg-tcgctt-gatcccgactttgtttt-at 33841594  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  33841593 tttgtgctttttctgg 33841578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 37581653 - 37581697
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgctt 254  Q
    ||||||||||| || ||||||||| | ||||||||||||||||||    
T  37581653 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctt 37581697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 35142435 - 35142551
Alignment:
Q  207 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||| |||| | ||||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || ||||    
T  35142435 ttccgtcccacccgaggcgaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttt 35142532  T
Q  307 tattttgtgctttttctgg 325  Q
    |||||| ||||||||||||    
T  35142533 tattttttgctttttctgg 35142551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 20614552 - 20614668
Alignment:
Q  207 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||| | || | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || ||||    
T  20614552 ttccgtcccactcgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttt 20614649  T
Q  307 tattttgtgctttttctgg 325  Q
    |||||||||||||||||||    
T  20614650 tattttgtgctttttctgg 20614668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 42570882 - 42570766
Alignment:
Q  207 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| |  ||||    
T  42570882 ttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgacctcgtttt 42570785  T
Q  307 tattttgtgctttttctgg 325  Q
    |||||||||||||||||||    
T  42570784 tattttgtgctttttctgg 42570766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 20278315 - 20278206
Alignment:
Q  214 ccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtattt-ccattattaataaaatgggtcgttttgatcccgactttatttttatttt 312  Q
    ||||||| || ||||||||  |||||||||||||||||||| | |||||  |||| |||||||||| || |||||||||||||||||||| |||||||||    
T  20278315 ccgcccgagatgaaagtgatcttgtgtagggctttttgctttaagtattggccatcattaataaaaagg-tcgttttgatcccgacttta-ttttatttt 20278218  T
Q  313 gtgctttttctg 324  Q
    ||||||||||||    
T  20278217 gtgctttttctg 20278206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 228 - 321
Target Start/End: Complemental strand, 15949385 - 15949294
Alignment:
Q  228 agtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgcttttt 321  Q
    ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || |||||||||||||||||||    
T  15949385 agtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttttattttgtgcttttt 15949294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 24693250 - 24693368
Alignment:
Q  204 tcattccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttat 303  Q
    ||||| ||||||||||| |||||||||| | || |||||||||| |||||| | ||||   ||| ||||||||||  |||||||| |||||||||||| |    
T  24693250 tcatttcgtcccgcccgagacgaaagtggacttatgtagggcttcttgctttaagtatggtcatcattaataaaa-aggtcgtttcgatcccgactttgt 24693348  T
Q  304 ttttattttgtgctttttct 323  Q
    ||| ||||||||||| ||||    
T  24693349 tttcattttgtgcttcttct 24693368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 246 - 325
Target Start/End: Original strand, 24288984 - 24289061
Alignment:
Q  246 tttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttctgg 325  Q
    ||||||||| |||||||| ||| |||||| |||  |||||| | |||||||||||| |||||||||||||||||||||||    
T  24288984 tttttgctttatgtattttcatcattaatgaaa--ggtcgtctcgatcccgactttgtttttattttgtgctttttctgg 24289061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 25498517 - 25498561
Alignment:
Q  281 ggtcgttttgatcccgactttatttttattttgtgctttttctgg 325  Q
    |||||||||||||||||| || |||||||||||||||||||||||    
T  25498517 ggtcgttttgatcccgaccttgtttttattttgtgctttttctgg 25498561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 16277299 - 16277412
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| |||| ||||||| |||| ||||||||||||||  || ||||| ||| |||||| |||  |||||| ||| ||||||| ||  ||||||    
T  16277299 cgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaa-aggtcgtcttggtcccgacctt-cttttat 16277396  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  16277397 tttgtgctttttctgg 16277412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 325
Target Start/End: Complemental strand, 30689671 - 30689561
Alignment:
Q  211 gtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttatt 310  Q
    ||||| |||| || |||||||||||  | ||||||||||||||| |||||||| ||| |||| | |||  |||||  ||||||||||||||  |||||||    
T  30689671 gtcccacccgagatgaaagtgaattcatctagggctttttgctttatgtattttcatcattagtgaaa--ggtcg-cttgatcccgacttt-gttttatt 30689576  T
Q  311 ttgtgctttttctgg 325  Q
    |||||||||||||||    
T  30689575 ttgtgctttttctgg 30689561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 321
Target Start/End: Original strand, 21116852 - 21116953
Alignment:
Q  217 cccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgc 316  Q
    |||| |||| ||||||||||||  |||||||||||||| |||||||  ||| |||||| |||  |||||| | ||||||||| ||  |||||||||||||    
T  21116852 cccgagacggaagtgaatttgttcagggctttttgctttatgtattctcatcattaatgaaa--ggtcgtctcgatcccgacctt-gttttattttgtgc 21116948  T
Q  317 ttttt 321  Q
    |||||    
T  21116949 ttttt 21116953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 3762798 - 3762686
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| |||| ||||||  |||| |||||||||||||||   |||||| ||| |||||| ||| || ||| || |||||||||||| |||| ||    
T  3762798 cgtcccacccgagacggaagtgagcttgtttagggctttttgcttttcgtattttcatcattaatgaaaagg-tcgctt-gatcccgactttgtttt-at 3762702  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  3762701 tttgtgctttttctgg 3762686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 125561 - 125677
Alignment:
Q  207 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||  ||||||||||| || ||||    
T  125561 ttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgacttgatcccgaccttgtttt 125658  T
Q  307 tattttgtgctttttctgg 325  Q
    |||||||||||||||||||    
T  125659 tattttgtgctttttctgg 125677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 13835232 - 13835348
Alignment:
Q  207 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| | ||||||||| || ||||    
T  13835232 ttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtctcgatcccgaccttgtttt 13835329  T
Q  307 tattttgtgctttttctgg 325  Q
    |||||||||||||||||||    
T  13835330 tattttgtgctttttctgg 13835348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 23882832 - 23882719
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||| ||||||  |||||||||||||||||||||  ||||||    
T  23882832 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgcttttat 23882733  T
Q  310 tttgtgctttttct 323  Q
    ||||||||||||||    
T  23882732 tttgtgctttttct 23882719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 4944652 - 4944539
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| | |||||||||||| ||| |||    
T  4944652 cgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtctcgatcccgactttgtttctat 4944555  T
Q  310 tttgtgctttttctgg 325  Q
    ||||| ||||||||||    
T  4944554 tttgtactttttctgg 4944539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 38413439 - 38413551
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||||||||||||||| |||||||||||||||||||||||| ||| |||||| |||  |||||| | |||||||||  || ||||||    
T  38413439 cgtcccacccgaggcgaaagtgaatttgtttagggctttttgcttcatgtattttcatcattaatgaaa--ggtcgtctcgatcccgac-ctagttttat 38413535  T
Q  310 tttgtgctttttctgg 325  Q
    |||||||||| |||||    
T  38413536 tttgtgctttgtctgg 38413551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 15770184 - 15770072
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| ||  |||||||| | | |||||||||||||||| | | |||  ||| |||||||||| || ||||||||||||| |||||||||||||    
T  15770184 cgtcccgcccgagataaaagtgaactggggtagggctttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccaactttatttttat 15770086  T
Q  310 tttgtgctttttct 323  Q
    ||||||||| ||||    
T  15770085 tttgtgcttcttct 15770072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 565933 - 565822
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||| ||||||||||| ||||| ||||||||| |||||||| ||| |||| | |||  |||||| |||||||||||||| |||| ||    
T  565933 cgtcccacccgaggcgagagtgaatttgtttagggatttttgctt-atgtattttcatcattagtgaaa--ggtcgtcttgatcccgactttgtttt-at 565838  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  565837 tttgtgctttttctgg 565822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 321
Target Start/End: Complemental strand, 34136345 - 34136235
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttcc-attattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||||||| || ||||||||  || ||||||||||||||||| | |||||    || |||||||||| || |||||||||||||||||||| |||||    
T  34136345 cgtcccgcccgagatgaaagtgatcttatgtagggctttttgctttaagtattggttatcattaataaaaagg-tcgttttgatcccgacttta-tttta 34136248  T
Q  309 ttttgtgcttttt 321  Q
    |||||||||||||    
T  34136247 ttttgtgcttttt 34136235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 317
Target Start/End: Original strand, 842588 - 842695
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||  |||||||||||| || ||||||||| ||||||||||| |||  ||| ||||||||||   ||||| ||||||||||| ||  ||||||    
T  842588 cgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatgaattgtcatcattaataaaaaaagtcgtcttgatcccgaccttgcttttat 842687  T
Q  310 tttgtgct 317  Q
    ||| ||||    
T  842688 tttatgct 842695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 317
Target Start/End: Original strand, 849764 - 849871
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||  |||||||||||| || ||||||||| ||||||||||| |||  ||| ||||||||||   ||||| ||||||||||| ||  ||||||    
T  849764 cgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatgaattgtcatcattaataaaaaaagtcgtcttgatcccgaccttgcttttat 849863  T
Q  310 tttgtgct 317  Q
    ||| ||||    
T  849864 tttatgct 849871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 317
Target Start/End: Original strand, 1207768 - 1207875
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||  |||||||||||| || ||||||||| ||||||||||| |||  ||| ||||||||||   ||||| ||||||||||| ||  ||||||    
T  1207768 cgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatgaattgtcatcattaataaaaaaagtcgtcttgatcccgaccttgcttttat 1207867  T
Q  310 tttgtgct 317  Q
    ||| ||||    
T  1207868 tttatgct 1207875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 13267988 - 13267875
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||||||| || |||| |||  |||||||||||||||||||| | |||||   |||  ||||||||| || ||||||| |||||||||||| |||||    
T  13267988 cgtcccgcccgagatgaaattgatcttgtgtagggctttttgctttaagtattggtcatctttaataaaaagg-tcgtttttatcccgacttta-tttta 13267891  T
Q  309 ttttgtgctttttctg 324  Q
    ||||||||||||||||    
T  13267890 ttttgtgctttttctg 13267875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 3427931 - 3427816
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttt-attttta 308  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||||||||||   |||| || ||||||||||||  ||||||    
T  3427931 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaa-aagtcgcttcgatcccgactttgcttttta 3427833  T
Q  309 ttttgtgctttttctgg 325  Q
    |||| ||||||||||||    
T  3427832 ttttttgctttttctgg 3427816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 5205912 - 5205799
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| |||| ||||||| |||| ||||||||||||||  || ||||| ||| |||||| |||  |||||| ||| ||||||| ||  ||||||    
T  5205912 cgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaa-aggtcgtcttggtcccgacctt-cttttat 5205815  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  5205814 tttgtgctttttctgg 5205799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 27973047 - 27972934
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| |||| ||||||| |||| |||||||||||||||   |||||| ||| |||||| ||| || ||| || |||||||||||| ||||  |    
T  27973047 cgtcccacccgagacggaagtgaacttgtttagggctttttgcttttcgtattttcatcattaatgaaaagg-tcgctt-gatcccgactttgttttatt 27972950  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  27972949 tttgtgctttttctgg 27972934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 42634511 - 42634397
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgtttt-gatcccgactttattttt 307  Q
    ||||||||||| || ||||||||| | |||||||||||||| ||| | | | ||  ||| |||||||||| || ||||||| ||||||||||||  ||||    
T  42634511 cgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaagg-tcgtttttgatcccgactttgctttt 42634413  T
Q  308 attttgtgctttttct 323  Q
    ||||||||||||||||    
T  42634412 attttgtgctttttct 42634397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 16269536 - 16269437
Alignment:
Q  223 acgaaagtgaatttgtgtagggctttttgcttcatgtat-ttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgcttttt 321  Q
    ||||||||||| |||||||||||| ||||||| | |||| |||||| ||||||||||   |||| |||||||||||||||  ||| |||| |||||||||    
T  16269536 acgaaagtgaacttgtgtagggctctttgctttaagtatcttccatcattaataaaa-aagtcgctttgatcccgacttt-gtttcatttcgtgcttttt 16269439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 8814468 - 8814582
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgtttt-gatcccgactttattttt 307  Q
    ||||||||||| || ||||||||| | |||||||||||||| ||| | | | ||  ||| ||||||||||  | ||||||| ||||||||||||  ||||    
T  8814468 cgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaatg-tcgtttttgatcccgactttgctttt 8814566  T
Q  308 attttgtgctttttct 323  Q
    ||||||||||||||||    
T  8814567 attttgtgctttttct 8814582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 16486273 - 16486196
Alignment:
Q  242 gggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgcttttt 321  Q
    ||||||||||||| ||| |||| ||| |||||||||  || |||||||||||||||| ||  ||||||||||||||||||    
T  16486273 gggctttttgctttatgaattttcatcattaataaagagg-tcgttttgatcccgac-ttcgttttattttgtgcttttt 16486196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 27437801 - 27437914
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| |||| ||||||| |||| ||||||||||||||  || ||||| ||| |||||| |||  || ||| ||| ||||||| ||  ||||||    
T  27437801 cgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaa-aggccgtcttggtcccgacctt-cttttat 27437898  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  27437899 tttgtgctttttctgg 27437914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 12587710 - 12587793
Alignment:
Q  240 tagggctttttgcttcatgtatt-tccattattaataaaatgggtcgttttgatcccgactttatt-tttattttgtgctttttct 323  Q
    ||||||||||||||||| | ||| ||||| ||||||||||  ||||| || ||||||||||||  | |||||||||||||||||||    
T  12587710 tagggctttttgcttcaggcattctccatcattaataaaa--ggtcgcttcgatcccgactttgctctttattttgtgctttttct 12587793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 8099464 - 8099348
Alignment:
Q  207 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| |  ||||    
T  8099464 ttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgacctcgtttt 8099367  T
Q  307 tattttgtgctttttctgg 325  Q
    |||||||||||||||||||    
T  8099366 tattttgtgctttttctgg 8099348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 14874155 - 14874268
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| |||||||||||| || ||||||| ||||||||| | ||||   ||| ||||||||||  |||||||||||||||||||||| ||||||    
T  14874155 cgtcccgcccgagacgaaagtgaacttatgtagggatttttgctttaagtatagtcatcattaataaaa-aggtcgttttgatcccgacttta-ttttat 14874252  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  14874253 tttgtgctttttctgg 14874268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 16365009 - 16365122
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||| ||||||  |||||||||||||||||||||  ||||||    
T  16365009 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgcttttat 16365108  T
Q  310 tttgtgctttttct 323  Q
    ||||||||||||||    
T  16365109 tttgtgctttttct 16365122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 22708181 - 22708294
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||| ||||||  |||||||||||||||||||||  ||||||    
T  22708181 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgcttttat 22708280  T
Q  310 tttgtgctttttct 323  Q
    ||||||||||||||    
T  22708281 tttgtgctttttct 22708294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 320
Target Start/End: Complemental strand, 3385776 - 3385667
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||  |||||||||||||||||||| | | |||  ||| |||||||||| || ||||||||||||||||||| |||| ||    
T  3385776 cgtcccgcccgagatgaaagtgatcttgtgtagggctttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccgactttgttttcat 3385678  T
Q  310 tttgtgctttt 320  Q
    |||||||||||    
T  3385677 tttgtgctttt 3385667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 12512283 - 12512395
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| |||||||||||| |||| ||||||||||| ||| | |||||| ||| |||||||||||   ||| ||||||||||||||| ||||||     
T  12512283 cgtcccacccgagacgaaagtgaacttgtttagggctttttcctttacgtattttcatcattaataaaat-aatcgctttgatcccgactttgtttttac 12512381  T
Q  310 tttgtgctttttct 323  Q
     |||||||| ||||    
T  12512382 cttgtgcttgttct 12512395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 322
Target Start/End: Original strand, 9187688 - 9187798
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || |||||| |  |||||||||| ||||||||| | | |||  ||| |||||||||| || |||||||||||||||||||  ||||||    
T  9187688 cgtcccgcccgagatgaaagttatcttgtgtagggttttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccgacttt-gttttat 9187785  T
Q  310 tttgtgctttttc 322  Q
    |||||||||||||    
T  9187786 tttgtgctttttc 9187798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 14921605 - 14921715
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||  |||||||||||| || ||||||||||||||||| | | |||  |||  ||||| |||  ||||| ||||||||||||||| |||| ||    
T  14921605 cgtcccgcccaagacgaaagtgaacttatgtagggctttttgctttaagcattgtcatcgttaat-aaagaggtcgctttgatcccgactttgttttcat 14921703  T
Q  310 tttgtgcttttt 321  Q
    ||||||||||||    
T  14921704 tttgtgcttttt 14921715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 211 - 321
Target Start/End: Complemental strand, 15571015 - 15570906
Alignment:
Q  211 gtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttatt 310  Q
    |||||||||  ||| |||||||| || ||||||||||||||||| | | |||  |||  ||||||||  || ||||||||||||||||||| |||| |||    
T  15571015 gtcccgcccaagacaaaagtgaacttatgtagggctttttgctttaagcattgtcatcgttaataaagagg-tcgttttgatcccgactttgttttcatt 15570917  T
Q  311 ttgtgcttttt 321  Q
    |||||||||||    
T  15570916 ttgtgcttttt 15570906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 211 - 321
Target Start/End: Complemental strand, 15575143 - 15575034
Alignment:
Q  211 gtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttatt 310  Q
    |||||||||  ||| |||||||| || ||||||||||||||||| | | |||  |||  ||||||||  || ||||||||||||||||||| |||| |||    
T  15575143 gtcccgcccaagacaaaagtgaacttatgtagggctttttgctttaagcattgtcatcgttaataaagagg-tcgttttgatcccgactttgttttcatt 15575045  T
Q  311 ttgtgcttttt 321  Q
    |||||||||||    
T  15575044 ttgtgcttttt 15575034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 16724073 - 16723976
Alignment:
Q  225 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 323  Q
    ||||||||| || |||||||||||||||||   | |||  |||  ||||||||| || ||||||||||||||||||| |||| ||||||||||||||||    
T  16724073 gaaagtgaacttatgtagggctttttgctttgagcattgtcatctttaataaaaagg-tcgttttgatcccgactttgttttcattttgtgctttttct 16723976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 3832047 - 3832006
Alignment:
Q  282 gtcgttttgatcccgactttatttttattttgtgctttttct 323  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  3832047 gtcgttttgatcccgactttgcttttattttgtgctttttct 3832006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 278
Target Start/End: Complemental strand, 12509377 - 12509309
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaa 278  Q
    |||||| |||| |||||||||||| || | ||||| ||||||||| | |||||| ||| ||||||||||    
T  12509377 cgtcccacccgtgacgaaagtgaacttatttaggggtttttgctttacgtattttcatcattaataaaa 12509309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 15898794 - 15898750
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgctt 254  Q
    ||||||||||  |||||||||||| || |||||||||||||||||    
T  15898794 cgtcccgcccaagacgaaagtgaacttatgtagggctttttgctt 15898750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 20557199 - 20557320
Alignment:
Q  204 tcattccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttat 303  Q
    ||||| ||||||||||| || ||||||||| |  ||||||||||||||||| | |  ||  ||| ||||||||||  |||||| |||||| ||||||| |    
T  20557199 tcatttcgtcccgcccgagatgaaagtgaactgatgtagggctttttgctttaagatttgtcatcattaataaaa-aggtcgtcttgatctcgactttgt 20557297  T
Q  304 tttt---attttgtgctttttct 323  Q
    ||||   | ||||||||||||||    
T  20557298 ttttttaaatttgtgctttttct 20557320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 41002112 - 41002228
Alignment:
Q  207 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||| |||| | | ||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || ||||    
T  41002112 ttccgtcccacccgaggcaaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttt 41002209  T
Q  307 tattttgtgctttttctgg 325  Q
    |||||| ||||||||||||    
T  41002210 tattttttgctttttctgg 41002228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 41010894 - 41011010
Alignment:
Q  207 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||| |||| | | ||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || ||||    
T  41010894 ttccgtcccacccgaggcaaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttt 41010991  T
Q  307 tattttgtgctttttctgg 325  Q
    |||||| ||||||||||||    
T  41010992 tattttttgctttttctgg 41011010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 8808554 - 8808667
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||| ||||||  |||||||||||||||||||||  ||||||    
T  8808554 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgcttttat 8808653  T
Q  310 tttgtgctttttct 323  Q
    ||||||||||||||    
T  8808654 tttgtgctttttct 8808667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 21611983 - 21612096
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||| ||||||  |||||||||||||||||||||  ||||||    
T  21611983 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgcttttat 21612082  T
Q  310 tttgtgctttttct 323  Q
    ||||||||||||||    
T  21612083 tttgtgctttttct 21612096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 11184203 - 11184316
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||||||| || ||||||||  ||||||| |||||||||||| | ||||||  ||| |||||||||| || ||||||||||||||||||| ||||||    
T  11184203 cgtcccgcccgagaggaaagtgatcttgtgtatggctttttgctttaagtatttgtcatcattaataaaaagg-tcgttttgatcccgactttgttttta 11184301  T
Q  309 ttttgtgctttttct 323  Q
     ||||||||||||||    
T  11184302 gtttgtgctttttct 11184316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 30093093 - 30092981
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||  |||||||||| ||||||||| | | |||  ||| |||||||||| || |||||||||||||||||||| ||||||    
T  30093093 cgtcccgcccgagatgaaagtgatcttgtgtagggttttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccgacttta-ttttat 30092996  T
Q  310 tttgtgctttttctg 324  Q
    |||||||||||||||    
T  30092995 tttgtgctttttctg 30092981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 12476337 - 12476225
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||| |||||  ||||||||||| |||||||||||||||||||| | | |||   || |||||||||| || ||||||||||||||||||| |||||||    
T  12476337 cgtcctgcccgatacgaaagtgaacttgtgtagggctttttgctttaagaattgtaatcattaataaaaagg-tcgttttgatcccgactttgtttttat 12476239  T
Q  310 tttgtgctttttct 323  Q
    | ||||||||||||    
T  12476238 tctgtgctttttct 12476225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 323
Target Start/End: Complemental strand, 46396727 - 46396627
Alignment:
Q  222 gacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgcttttt 321  Q
    |||||||||||| | |||||||||||||||||| | |  ||  ||| |||||||||| || |||||||||||||||||||||||| ||||||||||||||    
T  46396727 gacgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaagg-tcgttttgatcccgactttattttcattttgtgcttttt 46396629  T
Q  322 ct 323  Q
    ||    
T  46396628 ct 46396627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 23285369 - 23285256
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatt-tccattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||||||| || ||||||||  |||||||||||||||||||| | |||||   ||| ||||||||||  ||| |||||||||||||||||| |||||    
T  23285369 cgtcccgcccgagatgaaagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaa-aggttgttttgatcccgacttta-tttta 23285272  T
Q  309 ttttgtgctttttctg 324  Q
    ||||||||||||||||    
T  23285271 ttttgtgctttttctg 23285256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 14421591 - 14421704
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggcttttt-gcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||||||| || ||||||||| | ||| |||||||||| |||| | | |||  |||||||||||||| || ||||||||||||||||||| |||| |    
T  14421591 cgtcccgcccgagatgaaagtgaactggtgaagggcttttttgctttaagaattgtcattattaataaaaagg-tcgttttgatcccgactttgttttca 14421689  T
Q  309 ttttgtgctttttct 323  Q
    |||||||||||||||    
T  14421690 ttttgtgctttttct 14421704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 8609027 - 8609143
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatt-tccattattaataaaatgggtcgttttgatcccgacttt-attttt 307  Q
    ||||||||| | || ||||||||  |||||||||||||||||||| | |||||   ||| ||||||||||  |||||||||||||||||||||  |||||    
T  8609027 cgtcccgcctgagatgaaagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaa-aggtcgttttgatcccgactttgcttttt 8609125  T
Q  308 attttgtgctttttctgg 325  Q
    ||||||||||||||||||    
T  8609126 attttgtgctttttctgg 8609143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 325
Target Start/End: Complemental strand, 3241737 - 3241636
Alignment:
Q  222 gacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgcttttt 321  Q
    |||||||| | | |||| ||||||||||||||  | |||||| ||| | |||||||| |  ||||||||||||||||||| |||||||||||||||||||    
T  3241737 gacgaaaggggacttgtttagggctttttgctatacgtattttcatcactaataaaaag--tcgttttgatcccgactttgtttttattttgtgcttttt 3241640  T
Q  322 ctgg 325  Q
    ||||    
T  3241639 ctgg 3241636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 13109033 - 13108920
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||||||| || |||| |||  |||||||||||||||||||| | |||||   |||  ||||||||| || |||||||||||||||||||| |||||    
T  13109033 cgtcccgcccgagatgaaattgatcttgtgtagggctttttgctttaagtattggtcatctttaataaaaagg-tcgttttgatcccgacttta-tttta 13108936  T
Q  309 ttttgtgctttttctg 324  Q
    ||||||||||||||||    
T  13108935 ttttgtgctttttctg 13108920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 212 - 323
Target Start/End: Complemental strand, 15533365 - 15533255
Alignment:
Q  212 tcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattt 311  Q
    ||||||||  || ||||||||| | |||||||||||||||||| | |  ||  ||| |||||||||| || |||||||||||||||||||| ||| ||||    
T  15533365 tcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaagg-tcgttttgatcccgactttactttcattt 15533267  T
Q  312 tgtgctttttct 323  Q
    ||||||||||||    
T  15533266 tgtgctttttct 15533255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 70976 - 71072
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatt-tccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||||| || ||||||||  |||||||||||||||||||| | |||||   ||| ||||||||||  ||||||||||||||||||||||||||    
T  70976 cgtcccgcccgagatgaaagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaa-aggtcgttttgatcccgactttatttt 71072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 325
Target Start/End: Complemental strand, 26383516 - 26383401
Alignment:
Q  211 gtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttta--ttttta 308  Q
    |||||||||  |||||||||||| || |||||| ||||||| ||||||||||| ||| ||||||||||  ||||  ||||||||   |||||  ||||||    
T  26383516 gtcccgcccaagacgaaagtgaacttatgtaggactttttgtttcatgtattttcatcattaataaaa-aggtcaatttgatcctagctttattttttta 26383418  T
Q  309 ttttgtgctttttctgg 325  Q
    |||||||||||||||||    
T  26383417 ttttgtgctttttctgg 26383401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 323
Target Start/End: Original strand, 8620472 - 8620582
Alignment:
Q  212 tcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattt 311  Q
    ||||||||  || ||||||||| | |||||||||||||||||| | |  ||  ||| |||||||||| || ||||||| |||||||||||| ||| ||||    
T  8620472 tcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaagg-tcgttttaatcccgactttactttcattt 8620570  T
Q  312 tgtgctttttct 323  Q
    ||||||||||||    
T  8620571 tgtgctttttct 8620582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 317
Target Start/End: Original strand, 33568697 - 33568803
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||  |||||||||||||||||||||||| |||  ||| ||||||||||   ||||| ||||||||||| ||  ||||||    
T  33568697 cgtcccgcccgagatgaaagtgatcttgtgtagggctttttgcttcatgaattgtcatcattaataaaa-aagtcgtcttgatcccgaccttgcttttat 33568795  T
Q  310 tttgtgct 317  Q
    ||| ||||    
T  33568796 tttatgct 33568803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 6198431 - 6198544
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||||||| || ||||||||| | |||||||||||||| ||| | | | ||  ||| |||||||||| || |||||||||||||| ||||| ||| |    
T  6198431 cgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaagg-tcgttttgatcccgcctttactttca 6198529  T
Q  309 ttttgtgctttttct 323  Q
    |||||||||||||||    
T  6198530 ttttgtgctttttct 6198544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 25267305 - 25267416
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||| ||||||||||| ||||| ||||||||| |||||||| ||| |||| | |||  |||||  ||||||||||||||  ||||||    
T  25267305 cgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa--ggtcg-cttgatcccgacttt-gttttat 25267400  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  25267401 tttgtgctttttctgg 25267416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 10719036 - 10718923
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| |||| ||||||| |||| ||||||||||||||  || ||||| ||| |||||| |||  |||||| ||| ||||||| ||  ||||||    
T  10719036 cgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaa-aggtcgtcttggtcccgacctt-cttttat 10718939  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  10718938 tttgtgctttttctgg 10718923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 324
Target Start/End: Complemental strand, 14395265 - 14395164
Alignment:
Q  222 gacgaaagtgaatttgtgtagggctttttgcttcatgtattt-ccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttt 320  Q
    ||||||||||| ||| |  ||||||||||||||||||||||| |||| ||||||||||    |||||||||||| ||||||  ||| |||||||||||||    
T  14395265 gacgaaagtgagtttataaagggctttttgcttcatgtattttccatcattaataaaaaat-tcgttttgatcctgactttgcttt-attttgtgctttt 14395168  T
Q  321 tctg 324  Q
    ||||    
T  14395167 tctg 14395164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 15623714 - 15623811
Alignment:
Q  225 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 323  Q
    ||||||||| | |||||||||||||||||| | | |||  ||| |||||||||| || |||||||||||||| |||| |||| | ||||||||| ||||    
T  15623714 gaaagtgaactggtgtagggctttttgcttaaagaattgtcatcattaataaaaagg-tcgttttgatcccgcctttgttttcactttgtgcttcttct 15623811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 324
Target Start/End: Original strand, 27884281 - 27884392
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| |||||||||||| |||| ||||| ||||||||| |||||||| ||| |||| |  ||  |||||| | |||||||||||| ||||||     
T  27884281 cgtcccacccgagacgaaagtgaacttgtttaggg-tttttgctttatgtattttcatcattagttgaa-aggtcgtctcgatcccgactttgttttta- 27884377  T
Q  310 tttgtgctttttctg 324  Q
    |||||||||||||||    
T  27884378 tttgtgctttttctg 27884392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 3680529 - 3680644
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttt-attttta 308  Q
    ||||||||||| || ||||||||| | | |||||||||||||||| | | |||  ||| ||||||||||   |||| || ||||||||||||  ||||||    
T  3680529 cgtcccgcccgagatgaaagtgaactggcgtagggctttttgctttaagaattgtcatcattaataaaa-aagtcgcttcgatcccgactttgcttttta 3680627  T
Q  309 ttttgtgctttttctgg 325  Q
    |||| ||||||||||||    
T  3680628 ttttttgctttttctgg 3680644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 325
Target Start/End: Complemental strand, 8201867 - 8201790
Alignment:
Q  246 tttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttctgg 325  Q
    |||||||||  ||||||| ||| |||||| |||  |||||| | ||||||||| || |||||||||||||||||||||||    
T  8201867 tttttgctttttgtattttcatcattaatgaaa--ggtcgtctcgatcccgaccttgtttttattttgtgctttttctgg 8201790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 30017098 - 30017213
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttt-attttta 308  Q
    ||||||||||| || ||||||||| | | |||||||||||||||| | | |||  ||| ||||||||||   |||| || ||||||||||||  ||||||    
T  30017098 cgtcccgcccgagatgaaagtgaactggcgtagggctttttgctttaagaattgtcatcattaataaaa-aagtcgcttcgatcccgactttgcttttta 30017196  T
Q  309 ttttgtgctttttctgg 325  Q
    |||| ||||||||||||    
T  30017197 ttttttgctttttctgg 30017213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 306
Target Start/End: Complemental strand, 14884597 - 14884508
Alignment:
Q  216 gcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||| || |||||||||   |||||||||||||||||| | | |||  ||| ||||||||||  | ||||||||||||||||||||||||    
T  14884597 gcccgagatgaaagtgaacaggtgtagggctttttgctttaagaattgtcatcattaataaaaaag-tcgttttgatcccgactttatttt 14884508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 325
Target Start/End: Original strand, 17929635 - 17929731
Alignment:
Q  225 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttctg 324  Q
    |||||| || |||| ||||| ||||||||| |||||||| ||| |||||| |||  |||||| | |||||||||||| |||| |||| ||||||||||||    
T  17929635 gaaagttaaattgtttaggg-tttttgctttatgtattttcatcattaatgaaa--ggtcgtctcgatcccgactttgtttt-atttcgtgctttttctg 17929730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 59800 - 59705
Alignment:
Q  228 agtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttctgg 325  Q
    ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || |||||||||||||||||||||||    
T  59800 agtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttttattttgtgctttttctgg 59705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 32563 - 32674
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttt-attttta 308  Q
    ||||||||||| |||||||||||| || ||||||||||||||| | | | ||| |||| ||||||||||  |||||||||||||||||||||  ||||||    
T  32563 cgtcccgcccgagacgaaagtgaacttatgtagggctttttgcattaagaattgccatcattaataaaa-aggtcgttttgatcccgactttgtttttta 32661  T
Q  309 ttttgtgcttttt 321  Q
    |||||||||||||    
T  32662 ttttgtgcttttt 32674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 191537 - 191426
Alignment:
Q  211 gtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttatt 310  Q
    |||||||||| |||||||||||| ||||||||  |||||||||| | | |||  ||| |||||||||| || ||||||||| ||||||||| ||||||||    
T  191537 gtcccgcccgagacgaaagtgaacttgtgtagaactttttgctttaagcattgtcatcattaataaaaagg-tcgttttgaccccgactttgtttttatt 191439  T
Q  311 ttgtgctttttct 323  Q
    |||||||||||||    
T  191438 ttgtgctttttct 191426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 17679295 - 17679182
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||  ||||||||||| || |||||||    
T  17679295 cgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgccttgatcccgaccttgtttttat 17679198  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  17679197 tttgtgctttttctgg 17679182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 39841946 - 39841833
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| ||||||  ||  |||||  ||||||||||| || |||||||    
T  39841946 cgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatggaa--ggtcgccttgatcccgaccttgtttttat 39841849  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  39841848 tttgtgctttttctgg 39841833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 325
Target Start/End: Original strand, 6666813 - 6666915
Alignment:
Q  225 gaaagtgaatttgtgtagggcttttt----gcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttt 320  Q
    |||||||||||||| |||||||||||    |||| |||||||| ||| |||||| |||  |||||| | |||||||||||| ||||||||||||||||||    
T  6666813 gaaagtgaatttgtttagggctttttttttgctttatgtattttcatcattaatgaaa--ggtcgtctcgatcccgactttgtttttattttgtgctttt 6666910  T
Q  321 tctgg 325  Q
    |||||    
T  6666911 tctgg 6666915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 32003031 - 32003143
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||||||||||  ||||||||||||| ||||||| |||| |     
T  32003031 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaa-aggtcgttttgatctcgactttgttttcac 32003129  T
Q  310 tttgtgctttttct 323  Q
    ||||||||| ||||    
T  32003130 tttgtgcttcttct 32003143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 25856540 - 25856446
Alignment:
Q  225 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttt 320  Q
    ||||||||| | |||||||||||||||||| | | |||  ||| |||||||||| || ||||||||||||||||||| |||| |||||||| ||||    
T  25856540 gaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccgactttgttttcattttgtgttttt 25856446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 21479431 - 21479317
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgtttt-gatcccgactttattttt 307  Q
    ||||||||||| || ||||||||| | |||||||||||||| ||| | | | ||  ||| |||||||||| || ||||||| ||||||||||||  ||||    
T  21479431 cgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaagg-tcgtttttgatcccgactttgctttt 21479333  T
Q  308 attttgtgctttttct 323  Q
    ||||||||||||||||    
T  21479332 attttgtgctttttct 21479317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 310
Target Start/End: Complemental strand, 24703115 - 24703031
Alignment:
Q  225 gaaagtgaatttgtgtagggctttttgcttcatgta-tttccattattaataaaatgggtcgttttgatcccgactttatttttatt 310  Q
    ||||||||| |||| |||| |||||||||||||||| ||||||| ||||||||||    ||||||||||| ||||||| ||||||||    
T  24703115 gaaagtgaacttgtttaggtctttttgcttcatgtattttccatcattaataaaa--attcgttttgatctcgactttgtttttatt 24703031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 20736965 - 20737077
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| ||||||||||||||| |||| | | |||  |||  |||| ||||    ||||||||||||||||||| |||| ||    
T  20736965 cgtcccgcccgagatgaaagtgaacttgtgtagggcttttcgctttaagaattgtcatcgttaacaaaa-aattcgttttgatcccgactttgttttcat 20737063  T
Q  310 tttgtgctttttct 323  Q
    ||||||||| ||||    
T  20737064 tttgtgcttcttct 20737077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 20741834 - 20741946
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| ||||||||||||||| |||| | | |||  |||  |||| ||||    ||||||||||||||||||| |||| ||    
T  20741834 cgtcccgcccgagatgaaagtgaacttgtgtagggcttttcgctttaagaattgtcatcgttaacaaaa-aattcgttttgatcccgactttgttttcat 20741932  T
Q  310 tttgtgctttttct 323  Q
    ||||||||| ||||    
T  20741933 tttgtgcttcttct 20741946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 20745523 - 20745635
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| ||||||||||||||| |||| | | |||  |||  |||| ||||    ||||||||||||||||||| |||| ||    
T  20745523 cgtcccgcccgagatgaaagtgaacttgtgtagggcttttcgctttaagaattgtcatcgttaacaaaa-aattcgttttgatcccgactttgttttcat 20745621  T
Q  310 tttgtgctttttct 323  Q
    ||||||||| ||||    
T  20745622 tttgtgcttcttct 20745635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 22092695 - 22092589
Alignment:
Q  217 cccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtat-ttccattattaataaaatgggtcgttttgatcccgacttta-tttttattttgt 314  Q
    |||| |||||||||||| |  | |||| ||||||||||| ||||| |||||| |||||||||| |  ||| || ||||||||||||  ||||||||||||    
T  22092695 cccgagacgaaagtgaactcatttaggactttttgcttcgtgtatcttccatcattaataaaaag--tcgcttcgatcccgactttgctttttattttgt 22092598  T
Q  315 gctttttct 323  Q
    ||| |||||    
T  22092597 gctctttct 22092589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 9613 - 9726
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttt-attttta 308  Q
    ||||||||||| || ||||||||| |||||||||||||||||||| | | |||  ||| ||||||||||  |||||| ||||||||||||||  ||||||    
T  9613 cgtcccgcccgagatgaaagtgaacttgtgtagggctttttgctttaagaattgtcatcattaataaaa-aggtcgtcttgatcccgactttgtttttta 9711  T
Q  309 ttttgtgctttttct 323  Q
    |||||||||||||||    
T  9712 ttttgtgctttttct 9726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 9258 - 9370
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| ||| |||  ||| ||||||||||  ||||||||||||||||||||| |||| |     
T  9258 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttatgaattgtcatcattaataaaa-aggtcgttttgatcccgactttgttttcac 9356  T
Q  310 tttgtgctttttct 323  Q
    ||||||||| ||||    
T  9357 tttgtgcttcttct 9370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 11931 - 11818
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || || |||||| | |||||||||||||||||| | | |||  ||| ||||||||||  ||||||||||||||||||||| | || ||    
T  11931 cgtcccgcccgagatgatagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaagtggtcgttttgatcccgactttgtcttcat 11832  T
Q  310 tttgtgctttttct 323  Q
    ||||||||||||||    
T  11831 tttgtgctttttct 11818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 4525 - 4413
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtat-ttccattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||||| | |||||||||||| |  | ||||||||||||||||||| || |||||| |||||||||| |  ||| || |||||||||||| ||||||    
T  4525 cgtcccgcctgagacgaaagtgaactcatttagggctttttgcttcatgcatcttccatcattaataaaaag--tcgattcgatcccgactttgttttta 4428  T
Q  309 ttttgtgctttttct 323  Q
    |||||||||||||||    
T  4427 ttttgtgctttttct 4413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 24572 - 24458
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| || ||||| ||||||| ||| | | |||  ||| |||||||||| || ||||||||||||||||||| |||| ||    
T  24572 cgtcccgcccgagatgaaagtgaacttttgtagagcttttttctttaagaattgtcatcattaataaaaagg-tcgttttgatcccgactttgttttcat 24474  T
Q  310 tttgtgctttttctgg 325  Q
    ||||||||||||||||    
T  24473 tttgtgctttttctgg 24458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 5004 - 4906
Alignment:
Q  224 cgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 323  Q
    ||||||||||||||| |||||||| |||||| |||||||| ||||||| || |||  |||||| ||||||||||| ||  ||||||||||||||||||||    
T  5004 cgaaagtgaatttgtttagggcttcttgctttatgtattttcattattgatgaaa--ggtcgtcttgatcccgacctt-gttttattttgtgctttttct 4908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0327 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0327
Description:

Target: scaffold0327; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 14988 - 15103
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttt-attttta 308  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||||||||||  ||| ||||||||||| |||||  ||||||    
T  14988 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaa-aggttgttttgatcccaactttgtttttta 15086  T
Q  309 ttttgtgctttttctgg 325  Q
    |||||||||||||||||    
T  15087 ttttgtgctttttctgg 15103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 3584 - 3471
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatt-tccattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    |||| |||||| || ||||||||  |||||||||||||||||||| | |||||   ||| ||||||||||  ||||||||||||||| |||||| |||||    
T  3584 cgtctcgcccgagatgaaagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaa-aggtcgttttgatcccaacttta-tttta 3487  T
Q  309 ttttgtgctttttctg 324  Q
    ||||||||||||||||    
T  3486 ttttgtgctttttctg 3471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 210 - 324
Target Start/End: Original strand, 18456 - 18569
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    ||||||||||| || ||||||||  ||||||||||||||||||||   |||||   ||| |||||||||| || |||||||||| ||||||||| |||||    
T  18456 cgtcccgcccgagatgaaagtgatcttgtgtagggctttttgctttgagtattggtcatcattaataaaaagg-tcgttttgattccgacttta-tttta 18553  T
Q  309 ttttgtgctttttctg 324  Q
    ||||||||||||||||    
T  18554 ttttgtgctttttctg 18569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 210 - 321
Target Start/End: Complemental strand, 19898 - 19788
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| || ||||||||| ||||||| |||||||||||| | | |||  ||| ||||||||||  | ||||||||||||||||||| |||| ||    
T  19898 cgtcccacccgagatgaaagtgaacttgtgtatggctttttgctttaagaattgtcatcattaataaaaatg-tcgttttgatcccgactttgttttcat 19800  T
Q  310 tttgtgcttttt 321  Q
    ||||||||||||    
T  19799 tttgtgcttttt 19788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 212 - 323
Target Start/End: Original strand, 11410 - 11520
Alignment:
Q  212 tcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattt 311  Q
    ||||||||| || ||||||||| | |||||||||||||||||| | |  ||  ||| |||||||||| || ||||||||||||||||||| |||||||||    
T  11410 tcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagatttgtcatcattaataaaaagg-tcgttttgatcccgactttgtttttattt 11508  T
Q  312 tgtgctttttct 323  Q
    ||| ||| ||||    
T  11509 tgttcttcttct 11520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 8624 - 8512
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    |||||| |||| |||||||||||| |||| ||||||||||| ||| | |||||| ||| |||||||||||   ||| ||||||||||||||| ||||||     
T  8624 cgtcccacccgagacgaaagtgaacttgtttagggctttttcctttacgtattttcatcattaataaaat-aatcgctttgatcccgactttgtttttac 8526  T
Q  310 tttgtgctttttct 323  Q
     |||||||| ||||    
T  8525 cttgtgcttgttct 8512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 11100 - 11168
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaa 278  Q
    |||||| |||| |||||||||||| || | ||||| ||||||||| | |||||| ||| ||||||||||    
T  11100 cgtcccacccgtgacgaaagtgaacttatttaggggtttttgctttacgtattttcatcattaataaaa 11168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 325
Target Start/End: Complemental strand, 28612 - 28515
Alignment:
Q  226 aaagtgaatttgtgtagggctttttgcttcatgtattt-ccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttctg 324  Q
    |||||||| |||||| ||||| || ||||||||||||| |||| |||||||||| |  || |||||||||||||||| |||||||||||||||||| |||    
T  28612 aaagtgaacttgtgttgggctgtt-gcttcatgtattttccatcattaataaaaag--tcattttgatcccgactttgtttttattttgtgcttttcctg 28516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 7218 - 7329
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttattttt-a 308  Q
    ||||||||||  |||||||||||| || ||||||||||||||||| | ||||   |||  |||||||||  ||||||||||||||||||||| ||||| |    
T  7218 cgtcccgcccaagacgaaagtgaacttatgtagggctttttgctttaagtatcgtcatcgttaataaaa-aggtcgttttgatcccgactttgtttttca 7316  T
Q  309 ttttgtgcttttt 321  Q
    ||||||| |||||    
T  7317 ttttgtgtttttt 7329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 322
Target Start/End: Original strand, 32104 - 32214
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| || ||||||||| | ||| ||||||||||||||   | |||  ||| ||||||||||  || ||||||||||||||||||| ||||||    
T  32104 cgtcccgcccgagatgaaagtgaactggtgaagggctttttgcttttagcattgtcataattaataaaa-aggccgttttgatcccgacttta-ttttat 32201  T
Q  310 tttgtgctttttc 322  Q
    |||||||||||||    
T  32202 tttgtgctttttc 32214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 16828 - 16746
Alignment:
Q  240 tagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 323  Q
    ||||||||||||||| | | |||| ||| |||||||||| || ||||||||||||||||||| |||||||||| ||||| ||||    
T  16828 tagggctttttgctttaagaattttcatcattaataaaaagg-tcgttttgatcccgactttgtttttattttttgcttcttct 16746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 325
Target Start/End: Original strand, 153017 - 153126
Alignment:
Q  215 cgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgta-tttccattattaataaaatgggtcgttttgatcccgactttatttttattttg 313  Q
    |||||| |||||||||||| ||||||||||||||||||||| |||| ||||||| |||||| |||   | ||||||||||||||| ||  ||| |||||     
T  153017 cgcccgagacgaaagtgaacttgtgtagggctttttgcttcttgtattttccatcattaattaaa-aagccgttttgatcccgacctt-gtttcatttta 153114  T
Q  314 tgctttttctgg 325  Q
    ||||||||||||    
T  153115 tgctttttctgg 153126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 470
Target Start/End: Original strand, 154344 - 154448
Alignment:
Q  359 gaataatcttgtacaaatgtctagatacaatcattcacttactaaaatcaaacaaaaatcatatatgcagattaaacattgataaacccgtttaacacct 458  Q
    |||||||| | | |||||||||  |||||||||||||||| |||||||||||       |||| |||| ||||||||||||||||  ||||| ||||| |    
T  154344 gaataatcctttccaaatgtctgcatacaatcattcactttctaaaatcaaa-------cataaatgcggattaaacattgataagtccgttgaacacat 154436  T
Q  459 tacccatgtact 470  Q
    || |||||||||    
T  154437 taaccatgtact 154448  T

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Target: scaffold0068 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 22068 - 21971
Alignment:
Q  225 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 323  Q
    ||||||||| | |||||||||||||||||| | | |||  ||| |||||||||| || ||||||||||||||||||| |||| | ||||||||| ||||    
T  22068 gaaagtgaactggtgtagggctttttgcttaaagaattgtcatcattaataaaaagg-tcgttttgatcccgactttgttttcactttgtgcttcttct 21971  T

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Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 210 - 320
Target Start/End: Original strand, 99727 - 99836
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 309  Q
    ||||||||||| |  ||||||||| | |||||||||||||||||| | | |||  ||| | |||||||| || ||||||||| ||||||||| |||| ||    
T  99727 cgtcccgcccgaggtgaaagtgaactggtgtagggctttttgctttaagaattgtcatcactaataaaaagg-tcgttttgaacccgactttgttttcat 99825  T
Q  310 tttgtgctttt 320  Q
    |||||||||||    
T  99826 tttgtgctttt 99836  T

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Target: scaffold0362 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 317
Target Start/End: Complemental strand, 882 - 775
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttt-attttta 308  Q
    |||||| |||| || ||||||||| | |||| ||||||||||||| | | |||  ||| |||||||||| || |||||||||||||||||||  ||||||    
T  882 cgtcccacccgagatgaaagtgaactggtgtcgggctttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccgactttgtttttta 784  T
Q  309 ttttgtgct 317  Q
    |||||||||    
T  783 ttttgtgct 775  T

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Target: scaffold0114 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 30896 - 30802
Alignment:
Q  225 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttt 320  Q
    ||||||||| | |||||| ||||||||||| | | |||  ||| ||||||||||  | ||||||||||||||||||| |||| |||||||||||||    
T  30896 gaaagtgaactggtgtagagctttttgctttaagaattgtcatcattaataaaaaag-tcgttttgatcccgactttgttttcattttgtgctttt 30802  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 70859 - 70744
Alignment:
Q  207 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 306  Q
    ||||||||| |||| | || ||||||| |||| ||||||||||||||| |||||||| ||| | |||| |||  |||||| | |||||| || ||  |||    
T  70859 ttccgtcccacccgaggcgcaagtgaacttgtttagggctttttgctttatgtattttcatcactaatgaaa--ggtcgtctcgatcccaacctt-gttt 70763  T
Q  307 tattttgtgctttttctgg 325  Q
    |||||||||||||||||||    
T  70762 tattttgtgctttttctgg 70744  T

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Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 165957 - 166070
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggcttttt-gcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttattttta 308  Q
    |||||| |||| |||  ||||||| |||| ||||||||||| ||||  ||| ||| ||| |||||| |||  | ||| ||||||||||||||| ||||||    
T  165957 cgtcccacccgagactgaagtgaacttgtttagggcttttttgctttgtgtcttttcatcattaattaaaaag-tcgctttgatcccgactttgttttta 166055  T
Q  309 ttttgtgctttttct 323  Q
    |||||||||||||||    
T  166056 ttttgtgctttttct 166070  T

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Target: scaffold0029 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 75424 - 75535
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttattttt-a 308  Q
    ||||||||||  |||||||||||| || ||||||||||||||||| | | ||   |||  |||||||||  ||||||||||||||| ||||| ||||| |    
T  75424 cgtcccgcccaagacgaaagtgaacttatgtagggctttttgctttaagcatcgtcatcgttaataaaa-aggtcgttttgatcccaactttgtttttca 75522  T
Q  309 ttttgtgcttttt 321  Q
    ||||||| |||||    
T  75523 ttttgtgtttttt 75535  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 19535 - 19579
Alignment:
Q  281 ggtcgttttgatcccgactttatttttattttgtgctttttctgg 325  Q
    |||||| | |||||||||||| |||||||||||||||||||||||    
T  19535 ggtcgtctcgatcccgactttgtttttattttgtgctttttctgg 19579  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 307
Target Start/End: Original strand, 302238 - 302341
Alignment:
Q  204 tcattccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgta-tttccattattaataaaatgggtcgttttgatcccgacttta 302  Q
    ||||| ||||||||||  |||||||||||| || | ||||||||||||||||| | | ||||||| |||||||| |   || |||||||||||||||||     
T  302238 tcatttcgtcccgcccaagacgaaagtgaacttatttagggctttttgcttcaggcattttccatcattaataaga-aagttgttttgatcccgactttg 302336  T
Q  303 ttttt 307  Q
    |||||    
T  302337 ttttt 302341  T

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Target: scaffold0243 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 17796 - 17829
Alignment:
Q  290 gatcccgactttatttttattttgtgctttttct 323  Q
    |||||||||||| |||||||||||||||||||||    
T  17796 gatcccgactttgtttttattttgtgctttttct 17829  T

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Target: scaffold0125 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 12496 - 12565
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtat-ttccattattaataaaa 278  Q
    ||||||||||  |||||||||||| || | ||||||||||||||||| | || |||||| ||||||||||    
T  12496 cgtcccgcccaagacgaaagtgaacttatttagggctttttgcttcaggcatgttccatcattaataaaa 12565  T

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Target: scaffold0023 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 142605 - 142552
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtattt 263  Q
    |||||| |||| | ||| ||||||||||| ||||||||||||||| ||||||||    
T  142605 cgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattt 142552  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 278
Target Start/End: Complemental strand, 183453 - 183384
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtat-ttccattattaataaaa 278  Q
    ||||||||||  |||||||||||| || | ||||||||||||||||| | || |||||| ||||||||||    
T  183453 cgtcccgcccaagacgaaagtgaacttatttagggctttttgcttcaggcatgttccatcattaataaaa 183384  T

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Target: scaffold0551 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 9401 - 9357
Alignment:
Q  210 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgctt 254  Q
    ||||||||||| |||||||||||| |  |||||||||||||||||    
T  9401 cgtcccgcccgagacgaaagtgaactcatgtagggctttttgctt 9357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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