View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6191_low_1 (Length: 745)
Name: NF6191_low_1
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 409 - 728
Target Start/End: Complemental strand, 12596792 - 12596475
Alignment:
| Q |
409 |
ttattttaatatttcatcgatatcttaaagaaaaagcacacgttcagattcgagtgaaggttttatctcttatgggattttaattaatttgtttctagcc |
508 |
Q |
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| T |
12596792 |
ttattttaatatttcaccgatatcttaaagaaaa-gcacacattcagattcgagtgaaggatttagctcttgtgggattttgattaatttcttccaagcc |
12596694 |
T |
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| Q |
509 |
aagataagaaatgtgaaagaaaagcggtttgatatagttaatgatcatatagattaaactaacttcatttttcaaattttaacctataattatagaatct |
608 |
Q |
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| T |
12596693 |
atgataagaaatgtgaaagaaaataggcttgatatagtttatgatcatatagattaaactaacttcatttttcaaattttaacctataattatagaatct |
12596594 |
T |
|
| Q |
609 |
aaagaaaggatacccaatgcaaacatagggattaatccatcgaattcaattcaaaaatcaagtccgactactaagtcttcaacatttaaataaaagtaat |
708 |
Q |
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| T |
12596593 |
aaag-aaggatacccaatgcaaacatagggattaatccatcgaaatcaattcaaaaatcaagtccgactactaagtcttcaacatttaaataaaagtaat |
12596495 |
T |
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| Q |
709 |
aaaacattacatgcaatctt |
728 |
Q |
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| T |
12596494 |
aaaacattacatgcaatctt |
12596475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 455 - 593
Target Start/End: Complemental strand, 12579442 - 12579304
Alignment:
| Q |
455 |
gattcgagtgaaggttttatctcttatgggattttaattaatttgtttctagccaagataagaaatgtgaaagaaaagcggtttgatatagttaatgatc |
554 |
Q |
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| T |
12579442 |
gattcgagtggaggttttatctcttgtggcattttgattaatttatttttaccgaagataagaaatgtgaaagaaaagcggtttggtaaagtt-attatc |
12579344 |
T |
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| Q |
555 |
atatagattaaactaacttca-tttttcaaattttaacct |
593 |
Q |
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| T |
12579343 |
atattgattaaactattttcattttttcgaattttaacct |
12579304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 8e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 39406753 - 39406469
Alignment:
| Q |
10 |
attatactatacaccatctcttttcaactcggcggcgacggcg-catacactagcaacctgatattactgtaacagcatcagggcgtaggatgtaaccac |
108 |
Q |
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| T |
39406753 |
attatactatacacggtctcttttcaactcggcggcgactgcggcgtacaccggcaacctgacattattgtgatagcatcagggcgtaggatttaaccat |
39406654 |
T |
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| Q |
109 |
cacgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaattacgacatcttcatagttgttgttgttttgggatcttcatcctcaagga |
208 |
Q |
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| T |
39406653 |
cacaaagtggttattttcgatctcagtgatgaagctttgctcgttcgaaattgtgacatcttcatagtcattgttgttttgggaccttcatcctcaagga |
39406554 |
T |
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| Q |
209 |
agctagatcttaatcattgttgt---tgttttggagcttttattgcagaaggtgggagagaatgaggagatgaagataaaactta |
290 |
Q |
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| T |
39406553 |
agctagattttaatcattgttgttgttgttttggaggttttattgcagaaggtgggagagaatgaggagatgaagataaaactta |
39406469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 12 - 298
Target Start/End: Complemental strand, 50430994 - 50430704
Alignment:
| Q |
12 |
tatactatacaccatctcttttcaactcggcggcgacggcg-catacactagcaacctgatattactgtaacagcatcagggc-gtaggatgtaaccacc |
109 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| | ||||| | |||| ||| ||||||| ||| |||||||| ||||||| |||| | | |
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| T |
50430994 |
tatactatacaccgtctcttttcaactcggcggcgacggcggcgtacacaaacaacttgacgttactgtgacaacatcaggggtgtaggatttaacaatc |
50430895 |
T |
|
| Q |
110 |
acgaagtggttattttcgatctcagtgatgaagtttt--gctcattcgaaattacgacatcttcatagttgttgttgttttgggatcttcatcctcaagg |
207 |
Q |
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| T |
50430894 |
acgaagtggttattttcgatctcagtgatgaagttttttgctccttcaaaattacgacatcttcatagtcgttgttgttttgggaacttgatcctcaaag |
50430795 |
T |
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| Q |
208 |
aagctagatcttaatcattgttgttgttttggagcttttattgcagaaggtgggagagaatgaggagatgaagataaaacttataagtggt |
298 |
Q |
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| T |
50430794 |
aagctaaatcttaatcgttgttgttgttttggatgttttattgcataaagtaggagagaatgaggaagtgaagataaaacttaaaagtggt |
50430704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 21672349 - 21672584
Alignment:
| Q |
12 |
tatactatacaccatctcttttcaactcggcggcgacggcg-catacactagcaacctgatattactgtaacagcatcagggcgtaggatgtaaccacca |
110 |
Q |
| |
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|||||||||||| ||||||||||||||||||| ||||||| ||||||| |||||||||| ||| ||| ||| ||||| |||||| ||| |||||| || |
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| T |
21672349 |
tatactatacacagtctcttttcaactcggcggtgacggcggcatacaccagcaacctgacgttattgtgacaacatcatggcgtaagatttaaccatca |
21672448 |
T |
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| Q |
111 |
cgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaattacgacatcttcatagttgttgttgttttgggatcttcatcctcaaggaag |
210 |
Q |
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| T |
21672449 |
tgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaattacgatatcttcatagtcgctgttgttttgggatcttcaacctcaaagaag |
21672548 |
T |
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| Q |
211 |
ctagatcttaatcattgttgttgttttggagctttt |
246 |
Q |
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| T |
21672549 |
ctagatcttaatcattgttcttgttttggaggtttt |
21672584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 21672580 - 21672637
Alignment:
| Q |
351 |
gttttcaggcatccgtgaatattcgtatggtaaagtaccgtactaaatatcattttcc |
408 |
Q |
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| T |
21672580 |
gttttcaggcatccgtgaatatccgtatgcaaaattcctgtactaaatatcattttcc |
21672637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 410
Target Start/End: Complemental strand, 9222061 - 9221983
Alignment:
| Q |
332 |
cagcacgttgaaattgcatgttttcaggcatccgtgaatattcgtatggtaaagtaccgtactaaatatcattttcctt |
410 |
Q |
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| T |
9222061 |
cagcacgttgaaattgcatgttttcaaacatccgtaaattttcgtatgcaaatctcccgtaacaaatatcattttcctt |
9221983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 410
Target Start/End: Original strand, 58674 - 58752
Alignment:
| Q |
332 |
cagcacgttgaaattgcatgttttcaggcatccgtgaatattcgtatggtaaagtaccgtactaaatatcattttcctt |
410 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||||| |||||||| || | ||||| |||||||||||||||| |
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| T |
58674 |
cagcacgttgaaattgcatgtttttaaacatccgtgaattttcgtatgcaaatctcccgtaacaaatatcattttcctt |
58752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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