View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6191_low_10 (Length: 483)

Name: NF6191_low_10
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6191_low_10
NF6191_low_10
[»] chr7 (2 HSPs)
chr7 (17-300)||(5471312-5471595)
chr7 (332-475)||(5471143-5471286)
[»] scaffold0001 (1 HSPs)
scaffold0001 (332-426)||(148767-148861)
[»] scaffold0247 (1 HSPs)
scaffold0247 (353-423)||(22155-22225)
[»] chr8 (3 HSPs)
chr8 (355-424)||(21305881-21305950)
chr8 (29-120)||(21305603-21305694)
chr8 (224-288)||(21305750-21305814)
[»] chr5 (18 HSPs)
chr5 (332-428)||(33904382-33904478)
chr5 (338-424)||(33821626-33821712)
chr5 (332-424)||(33734290-33734382)
chr5 (17-120)||(33821329-33821432)
chr5 (186-285)||(33748619-33748715)
chr5 (355-423)||(33762775-33762843)
chr5 (355-424)||(33679825-33679894)
chr5 (186-285)||(33834739-33834835)
chr5 (231-291)||(33821519-33821579)
chr5 (355-434)||(33698542-33698621)
chr5 (353-424)||(33865894-33865965)
chr5 (194-291)||(33734152-33734249)
chr5 (356-424)||(33748786-33748854)
chr5 (356-424)||(33834906-33834974)
chr5 (169-288)||(33762592-33762711)
chr5 (198-281)||(33865739-33865822)
chr5 (64-129)||(33748512-33748577)
chr5 (72-120)||(33834640-33834688)
[»] scaffold0023 (1 HSPs)
scaffold0023 (333-424)||(114207-114298)
[»] scaffold0193 (1 HSPs)
scaffold0193 (356-424)||(25218-25286)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 5471595 - 5471312
Alignment:
Q  17 acttgctcccctaagttccataaactttctgaccacattgtacaaggtattgggacattacctagaattggttgtgaagaagaagcacaatctttaccaa 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5471595 acttgctcccccaagttccataaactttctgaccacattgtacaaggtattgggacattacctagaattggttgtgaagaagaagcacaatctttaccaa 5471496  T
Q  117 tttggttaggaacaaccatagtcattttgtcatcaagatctctaggaaaacaaccatcattgtttgaagccaataatggttgtgtcacaaaattattgtg 216  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5471495 tttggttaggaacaaccatagtcattttgtcatcacgatctctaggaaaacaaccatcattgtttgaagccaataatggttgtgtcacaaaattattgtg 5471396  T
Q  217 tttcacattcaaccaagatgattgagttgaaaaagttataggtctaggtttaataacttgatgagctttcattgtctccattgg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5471395 tttcacattcaaccaagatgattgagttgaaaaagttataggtctaggtttaataacttggtgagctttcattgtctccattgg 5471312  T

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Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 332 - 475
Target Start/End: Complemental strand, 5471286 - 5471143
Alignment:
Q  332 gaaaccaccttcttcaacaagtgtgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatctaaatatac 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5471286 gaaaccaccttcttcaacaagtgtgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatctaaatatac 5471187  T
Q  432 atatatgattaaatgtggctnnnnnnnttgtatattcctatgtt 475  Q
    ||||||||||||||||||||       |||||||||||||||||    
T  5471186 atatatgattaaatgtggctaaaaaaattgtatattcctatgtt 5471143  T

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Target: scaffold0001 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 332 - 426
Target Start/End: Original strand, 148767 - 148861
Alignment:
Q  332 gaaaccaccttcttcaacaagtgtgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatctaaa 426  Q
    ||||||||||||||   ||||||||||| ||||||||| || |||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  148767 gaaaccaccttcttgtgcaagtgtgtgtgccaatagttctttacatcattagctgttcttcccggaagccttccagcaatcaatgaccatctaaa 148861  T

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Target: scaffold0247 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 423
Target Start/End: Complemental strand, 22225 - 22155
Alignment:
Q  353 tgtgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatct 423  Q
    ||||| ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  22225 tgtgtattccaatagtttttcacatcattagctgttctacctggaagccttccagcaatcaatgaccatct 22155  T

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Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 21305881 - 21305950
Alignment:
Q  355 tgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatcta 424  Q
    ||||| ||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  21305881 tgtgtgccaatagttcttcacatcattagctgttctacccggaagccttccagcaatcaatgaccatcta 21305950  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 21305603 - 21305694
Alignment:
Q  29 aagttccataaactttctgaccacattgtacaaggtattgggacattacctagaattggttgtgaagaagaagcacaatctttaccaatttg 120  Q
    |||||||| ||||| ||  ||||||||  ||| ||||||||| |||||||||||  ||||| ||||| ||||||||| ||| ||||||||||    
T  21305603 aagttccacaaactgtcacaccacatttcacatggtattggggcattacctagatctggttttgaagtagaagcacactctctaccaatttg 21305694  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 21305750 - 21305814
Alignment:
Q  224 ttcaaccaagatgattgagttgaaaaagttataggtctaggtttaataacttgatgagctttcat 288  Q
    |||||||||  ||| ||| |||| ||||||||||| | |||||||||||||| ||||||||||||    
T  21305750 ttcaaccaatttgaatgacttgacaaagttataggacgaggtttaataacttcatgagctttcat 21305814  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 332 - 428
Target Start/End: Original strand, 33904382 - 33904478
Alignment:
Q  332 gaaaccaccttcttcaacaagtgtgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatctaaata 428  Q
    ||||||| ||||||   ||| ||||||| |||||| || ||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33904382 gaaaccatcttctttctcaaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatctaaata 33904478  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 338 - 424
Target Start/End: Original strand, 33821626 - 33821712
Alignment:
Q  338 accttcttcaacaagtgtgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatcta 424  Q
    |||||||||  ||| ||||||||||||||||||||||||  |||||| |||||||  ||||||||| ||||||||||||||||||||    
T  33821626 accttcttccgcaaatgtgtgttccaatagtttttcacatcattagccgttctactaggaagccttgcagcaatcaatgaccatcta 33821712  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 33734290 - 33734382
Alignment:
Q  332 gaaaccaccttcttcaacaagtgtgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatcta 424  Q
    ||||| |||||||||  ||| ||||||| |||| |||||||||||  |||||| |||||||| ||||||||| ||||||||||||||||||||    
T  33734290 gaaacaaccttcttccgcaaatgtgtgtgccaaaagtttttcacatcattagcagttctaccaggaagccttgcagcaatcaatgaccatcta 33734382  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 33821329 - 33821432
Alignment:
Q  17 acttgctcccctaagttccataaactttctgaccacattgtacaaggtattgggacattacctagaattggttgtgaagaagaagcacaatctttaccaa 116  Q
    ||||| ||||| |||||||||||||| || |||||||||  ||| ||||  || |||||||||||| || ||||||||| ||||||||||||| ||||||    
T  33821329 acttgttcccccaagttccataaactgtccgaccacattccacatggtacgggaacattacctagactttgttgtgaagcagaagcacaatctctaccaa 33821428  T
Q  117 tttg 120  Q
    ||||    
T  33821429 tttg 33821432  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 186 - 285
Target Start/End: Original strand, 33748619 - 33748715
Alignment:
Q  186 ccaataatggttgtgtcacaaaattattgtgtttcacattcaaccaagatgattgagttgaaaaagttataggtctaggtttaataacttgatgagcttt 285  Q
    |||||| ||| ||||||||||||||||   ||||| |||||||||||| ||| ||||||||||||||||  || | |||||||||||||| |||||||||    
T  33748619 ccaatattggatgtgtcacaaaattat---gtttcccattcaaccaaggtgaatgagttgaaaaagttaatggacgaggtttaataacttcatgagcttt 33748715  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 33762775 - 33762843
Alignment:
Q  355 tgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatct 423  Q
    ||||| ||||||||||||||||  ||| ||||||||||| ||||||||| |||||||||||||||||||    
T  33762775 tgtgtgccaatagtttttcacatcattcgctgttctaccgggaagccttgcagcaatcaatgaccatct 33762843  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 33679825 - 33679894
Alignment:
Q  355 tgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatcta 424  Q
    ||||| |||||| || ||||||  ||||||||||||||||||||||||  ||||||||||||||||||||    
T  33679825 tgtgtgccaataattcttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatcta 33679894  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 285
Target Start/End: Original strand, 33834739 - 33834835
Alignment:
Q  186 ccaataatggttgtgtcacaaaattattgtgtttcacattcaaccaagatgattgagttgaaaaagttataggtctaggtttaataacttgatgagcttt 285  Q
    |||||| ||| ||||||||||||||||   ||||| |||||||||||| ||| ||||||||||||||||  || | |||||| ||||||| |||||||||    
T  33834739 ccaatattggatgtgtcacaaaattat---gtttcccattcaaccaaggtgaatgagttgaaaaagttaatggacgaggtttgataacttcatgagcttt 33834835  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 33821519 - 33821579
Alignment:
Q  231 aagatgattgagttgaaaaagttataggtctaggtttaataacttgatgagctttcattgt 291  Q
    ||||||| |||||||||| ||||||||||| |||| ||||||||| |||||||||||||||    
T  33821519 aagatgaatgagttgaaagagttataggtcgaggtataataacttcatgagctttcattgt 33821579  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 434
Target Start/End: Original strand, 33698542 - 33698621
Alignment:
Q  355 tgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatctaaatatacata 434  Q
    ||||| |||||| || ||||||  ||||||||| ||||||||||||||| |||||||||| ||||||||| | |||||||    
T  33698542 tgtgtgccaataattcttcacatcattagctgtcctacccggaagccttgcagcaatcaaagaccatctatacatacata 33698621  T

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Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 424
Target Start/End: Original strand, 33865894 - 33865965
Alignment:
Q  353 tgtgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatcta 424  Q
    ||||||| |||||| || ||||||  |||||||||||||||||| || ||| ||||||||||||||||||||    
T  33865894 tgtgtgtgccaataattcttcacatcattagctgttctacccgggagtcttgcagcaatcaatgaccatcta 33865965  T

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Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 291
Target Start/End: Original strand, 33734152 - 33734249
Alignment:
Q  194 ggttgtgtcacaaaattattgtgtttcacattcaaccaagatgattgagttgaaaaagttataggtctaggtttaataacttgatgagctttcattgt 291  Q
    ||||||| ||||||||||   ||||||  ||||||||| ||||| |||||||||||| ||  ||||   ||||||||||||| |||||||||||||||    
T  33734152 ggttgtgacacaaaattaacatgtttcctattcaaccatgatgaatgagttgaaaaaattcgaggttggggtttaataacttcatgagctttcattgt 33734249  T

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Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 424
Target Start/End: Original strand, 33748786 - 33748854
Alignment:
Q  356 gtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatcta 424  Q
    |||||||||||||||||||||  |||||||||||||||  |||| ||| |||||||||| | |||||||    
T  33748786 gtgttccaatagtttttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatcta 33748854  T

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Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 424
Target Start/End: Original strand, 33834906 - 33834974
Alignment:
Q  356 gtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatcta 424  Q
    |||||||||||||||||||||  |||||||||||||||  |||| ||| |||||||||| | |||||||    
T  33834906 gtgttccaatagtttttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatcta 33834974  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 33762592 - 33762711
Alignment:
Q  169 accatcattgtttgaagccaataatggttgtgtcacaaaattattgtgtttcacattcaaccaagatgattgagttgaaaaagttataggtctaggttta 268  Q
    |||||| || |||||||||| || ||||||||| ||||||||||| || |||   |||||||| | ||| |||||||||||| ||  ||||  |||||||    
T  33762592 accatctttatttgaagccagtactggttgtgtaacaaaattattttgcttcttgttcaaccatggtgaatgagttgaaaaaattcgaggttgaggttta 33762691  T
Q  269 ataacttgatgagctttcat 288  Q
    ||||||| ||| | ||||||    
T  33762692 ataacttcatgtgttttcat 33762711  T

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Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 281
Target Start/End: Original strand, 33865739 - 33865822
Alignment:
Q  198 gtgtcacaaaattattgtgtttcacattcaaccaagatgattgagttgaaaaagttataggtctaggtttaataacttgatgag 281  Q
    |||||||||||||||| | |||| |||||||||| | ||| |||| ||||||||||  ||||  |||||||||||||| |||||    
T  33865739 gtgtcacaaaattattatatttcccattcaaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatgag 33865822  T

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Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 33748512 - 33748577
Alignment:
Q  64 tattgggacattacctagaattggttgtgaagaagaagcacaatctttaccaatttggttaggaac 129  Q
    ||||||| ||||||||||  |||||||||||  ||||||||||||| |||||||||| | ||||||    
T  33748512 tattggggcattacctagtcttggttgtgaatcagaagcacaatctctaccaatttgatcaggaac 33748577  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 33834640 - 33834688
Alignment:
Q  72 cattacctagaattggttgtgaagaagaagcacaatctttaccaatttg 120  Q
    ||||||||||  |||||||||||  ||||||||||||| ||||||||||    
T  33834640 cattacctagtcttggttgtgaatcagaagcacaatctctaccaatttg 33834688  T

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Target: scaffold0023 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 333 - 424
Target Start/End: Complemental strand, 114298 - 114207
Alignment:
Q  333 aaaccaccttcttcaacaagtgtgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatcta 424  Q
    |||| |||||||||  ||| ||||||| |||||||||||| |||  ||||||||||||| ||||||||||||| ||||||||||||||||||    
T  114298 aaacaaccttcttcctcaaatgtgtgtgccaatagtttttgacatcattagctgttctagccggaagccttcccgcaatcaatgaccatcta 114207  T

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Target: scaffold0193 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 424
Target Start/End: Complemental strand, 25286 - 25218
Alignment:
Q  356 gtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatcta 424  Q
    |||||||||||||||||||||  |||||||| ||||||| |||| ||| |||||||||||| |||||||    
T  25286 gtgttccaatagtttttcacatcattagctgatctaccctgaagtcttgcagcaatcaatgtccatcta 25218  T

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