View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6191_low_11 (Length: 425)
Name: NF6191_low_11
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 139 - 405
Target Start/End: Original strand, 46412560 - 46412825
Alignment:
| Q |
139 |
tatatttattaccgcaaatagttttaccactcaccgtccttccctcctttcttttgtttgatttttcttccattttatgtttgcggtgattctgtctctc |
238 |
Q |
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| T |
46412560 |
tatatttattaccgcaaatacttttagcactcaccatcct-ccctcgtttcttttgtttgatttttcttccattttatgtttgcggtgattctgtctctc |
46412658 |
T |
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| Q |
239 |
actttttatgattctctaaattttgttctcttcctacattcacattcaccacctatttccttctttttcattctctctctgtcactcactcctaactcta |
338 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
46412659 |
actttttatgattctctaaattctgttctcttcctacattcacattcaccacctatttccttctttttcattctctctctgtcactcactcctaactcaa |
46412758 |
T |
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| Q |
339 |
attccaaaattctagcctcgaactttggcattaaaattctaccatttcactttacgtaacccacccc |
405 |
Q |
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| T |
46412759 |
attccaaaattctagcctcgaaatttggcattaaaattctaccatttcactttacgtaacccacccc |
46412825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 46412227 - 46412361
Alignment:
| Q |
13 |
ttctcacttaccatatcattttttaaactatacttactagtatattttacgannnnnnnn-gtcaatttttatttattatgttcccatcttggcgtaaaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| |
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| T |
46412227 |
ttctcacttaccatatcattttttaaactatacttactagtatattttacgatttttttttgtcaatttttatttattatatttccatcttggcgtaaaa |
46412326 |
T |
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| Q |
112 |
gtatgagaagaaaattttgcttcatgatatattta |
146 |
Q |
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| T |
46412327 |
gtatgagaagaaaattttgcttcatgatatattta |
46412361 |
T |
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