View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6191_low_12 (Length: 420)
Name: NF6191_low_12
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 50893790 - 50894185
Alignment:
| Q |
11 |
agaatatctgcctatttcactatttcttcttctttctttctgtttcgagaaaacggtaaacaagccacataaattgtgaatgtctactgtgccatcttga |
110 |
Q |
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| T |
50893790 |
agaatatgtgcctatttcacgatttcttcttctttctttctgtttcgagaaaacggtaaacaagccacataaaatgtgaatgtctactgtgccatcttga |
50893889 |
T |
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| Q |
111 |
gttgtctcaatatttgaatagcacatttcagaataaccaaccacatttatacaaaaaataatcaatgatgaatatgcacacacatttacaatatccatct |
210 |
Q |
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| T |
50893890 |
gctgtctcaatatttgaatagcacatttcagaacaaccaacaagatttatacaaaaaataatcaatgacgaatatgcacacacatttacaatatccatct |
50893989 |
T |
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| Q |
211 |
taataatctaaaacgataaagtatacaaaatctacaaaattatattttattgtacggaatggacatacctctgaatttgtaacattg--ataacaccaaa |
308 |
Q |
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| T |
50893990 |
taataatctaaaacgataaagtatacaaaatctacaaaattatattttattgtacggaatgggcatacctctgaatttgtaacattgatataacaccaaa |
50894089 |
T |
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| Q |
309 |
gttattgattaaattcacacttcatcaaacctaaactttcaacctaatccaataaacatcatgtttgaacggaaaataaaaaacacgccacacaaa |
404 |
Q |
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| T |
50894090 |
gttattgattaaatccgcacttcatcaaacctaaactttcaacctaatccaataaacatcatatttgaacggaaaataaaaaacacgccacacaaa |
50894185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 36261219 - 36261183
Alignment:
| Q |
283 |
gaatttgtaacattgataacaccaaagttattgatta |
319 |
Q |
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| T |
36261219 |
gaatttgtaacattgataacaccaaattcattgatta |
36261183 |
T |
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