View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6191_low_13 (Length: 413)

Name: NF6191_low_13
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6191_low_13
NF6191_low_13
[»] chr2 (4 HSPs)
chr2 (7-164)||(40200881-40201038)
chr2 (314-403)||(40197375-40197464)
chr2 (233-308)||(40200738-40200813)
chr2 (314-403)||(7306070-7306159)
[»] chr8 (1 HSPs)
chr8 (314-403)||(26617713-26617802)
[»] chr7 (2 HSPs)
chr7 (314-403)||(8020732-8020821)
chr7 (314-394)||(25712590-25712670)
[»] chr3 (2 HSPs)
chr3 (314-403)||(54345856-54345945)
chr3 (354-403)||(27157155-27157204)
[»] chr1 (4 HSPs)
chr1 (314-403)||(23948819-23948908)
chr1 (314-403)||(5307837-5307926)
chr1 (314-403)||(23722408-23722497)
chr1 (315-403)||(50953531-50953619)
[»] chr4 (1 HSPs)
chr4 (314-403)||(34390793-34390882)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 40201038 - 40200881
Alignment:
Q  7 atcatttttcttatatagactcaagaactgtcataaagttnnnnnnnngttaatatttgattttataaaatttccctaaaactcatttataaaattttga 106  Q
    |||| |||||||||||||||||||||||||||||||||||        |||||||||||||||||| | |||||| ||||||||||| ||||||||||||    
T  40201038 atcagttttcttatatagactcaagaactgtcataaagttaaaaaaaagttaatatttgattttattatatttccttaaaactcattaataaaattttga 40200939  T
Q  107 ccataactcatttttgaccaagaccaaaactcatttgtactactaaaattgtatacat 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40200938 ccataactcatttttgaccaagaccaaaactcatttgtactactaaaattgcatacat 40200881  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 40197464 - 40197375
Alignment:
Q  314 gagattggaacattgatttccttatgcacaactttccaactgacaatgttagtcaaattcttgcgctttcggtccctaatgatgatgatg 403  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40197464 gagattggaacattgatttccttatgaacaactttccaactaacaatgttagtcaaattcttgcgctttcggtccctaatgatgatgatg 40197375  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 40200813 - 40200738
Alignment:
Q  233 gtgaacgcattaccaaacaacgatttttgtgagaatcaaactctatactacgttaaacaactacatcatttaataa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40200813 gtgaacgcattaccaaacaacgatttttgtgagaatcaaactctatactacgttaaacaactacatcatttaataa 40200738  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 7306159 - 7306070
Alignment:
Q  314 gagattggaacattgatttccttatgcacaactttccaactgacaatgttagtcaaattcttgcgctttcggtccctaatgatgatgatg 403  Q
    |||||||||||||||||||||| ||  |||||||  || |||||| ||||| |||||||||||| |||||| ||||||||||||||||||    
T  7306159 gagattggaacattgatttcctcataaacaacttgtcagctgacactgttaatcaaattcttgcactttcgatccctaatgatgatgatg 7306070  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 26617802 - 26617713
Alignment:
Q  314 gagattggaacattgatttccttatgcacaactttccaactgacaatgttagtcaaattcttgcgctttcggtccctaatgatgatgatg 403  Q
    |||||||||||||||||||||| ||  ||||||| |||||||||| ||||| |||||||||||||||| || ||||||||||||||||||    
T  26617802 gagattggaacattgatttcctcataaacaacttgccaactgacactgttaatcaaattcttgcgcttccgatccctaatgatgatgatg 26617713  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 8020821 - 8020732
Alignment:
Q  314 gagattggaacattgatttccttatgcacaactttccaactgacaatgttagtcaaattcttgcgctttcggtccctaatgatgatgatg 403  Q
    |||||||||||||||||||||| ||  | ||||| |||||| ||| ||||| ||||||||||||||||||  ||||||||||||||||||    
T  8020821 gagattggaacattgatttcctcataaataacttgccaactaacactgttaatcaaattcttgcgctttcaatccctaatgatgatgatg 8020732  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 314 - 394
Target Start/End: Original strand, 25712590 - 25712670
Alignment:
Q  314 gagattggaacattgatttccttatgcacaactttccaactgacaatgttagtcaaattcttgcgctttcggtccctaatg 394  Q
    |||||||||||| ||||||||||||| ||||||| ||||| |||| ||||||||| ||||||| |||| ||||||||||||    
T  25712590 gagattggaacactgatttccttatgaacaacttgccaacagacactgttagtcagattcttgtgcttccggtccctaatg 25712670  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 54345856 - 54345945
Alignment:
Q  314 gagattggaacattgatttccttatgcacaactttccaactgacaatgttagtcaaattcttgcgctttcggtccctaatgatgatgatg 403  Q
    |||||||||||||||||||||| ||  | ||||| |||||||||| ||||| |||||||||||||||| |  ||||||||||||||||||    
T  54345856 gagattggaacattgatttcctcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg 54345945  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 27157204 - 27157155
Alignment:
Q  354 tgacaatgttagtcaaattcttgcgctttcggtccctaatgatgatgatg 403  Q
    ||||| ||||| |||||||||||||||| || ||| ||||||||||||||    
T  27157204 tgacactgttaatcaaattcttgcgcttccgatccttaatgatgatgatg 27157155  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 23948819 - 23948908
Alignment:
Q  314 gagattggaacattgatttccttatgcacaactttccaactgacaatgttagtcaaattcttgcgctttcggtccctaatgatgatgatg 403  Q
    |||||||||||||||||||||| ||  | ||||| |||||| ||| ||||| ||||||||||||||||||  ||||||||||||||||||    
T  23948819 gagattggaacattgatttcctcataaataacttgccaactaacactgttaatcaaattcttgcgctttcaatccctaatgatgatgatg 23948908  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 5307837 - 5307926
Alignment:
Q  314 gagattggaacattgatttccttatgcacaactttccaactgacaatgttagtcaaattcttgcgctttcggtccctaatgatgatgatg 403  Q
    |||||||||||||||||||||  ||  | ||||| |||||||||| ||||| |||||||||||||||| |  ||||||||||||||||||    
T  5307837 gagattggaacattgatttccgcataaataacttgccaactgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg 5307926  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 23722408 - 23722497
Alignment:
Q  314 gagattggaacattgatttccttatgcacaactttccaactgacaatgttagtcaaattcttgcgctttcggtccctaatgatgatgatg 403  Q
    ||||||||||||||||||| || ||  | ||||| ||| |||||| ||||| |||||||||||||||| |  ||||||||||||||||||    
T  23722408 gagattggaacattgattttctcataaataacttgccagctgacactgttaatcaaattcttgcgcttccaatccctaatgatgatgatg 23722497  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 50953619 - 50953531
Alignment:
Q  315 agattggaacattgatttccttatgcacaactttccaactgacaatgttagtcaaattcttgcgctttcggtccctaatgatgatgatg 403  Q
    ||||||||||||| ||||||| ||  | |||||  || |||||| ||||| ||||||||||||||||  | ||||||||||||||||||    
T  50953619 agattggaacattaatttcctcataaataacttgacagctgacactgttaatcaaattcttgcgcttctgatccctaatgatgatgatg 50953531  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 34390882 - 34390793
Alignment:
Q  314 gagattggaacattgatttccttatgcacaactttccaactgacaatgttagtcaaattcttgcgctttcggtccctaatgatgatgatg 403  Q
    |||||||||||||||||||||| ||  | ||||| ||| ||||||  |||| ||||||| || ||||| || ||||||||||||||||||    
T  34390882 gagattggaacattgatttcctcataaataacttgccagctgacaccgttaatcaaattattacgcttccgatccctaatgatgatgatg 34390793  T

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