View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6191_low_15 (Length: 369)

Name: NF6191_low_15
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6191_low_15
NF6191_low_15
[»] chr7 (2 HSPs)
chr7 (16-191)||(36386709-36386884)
chr7 (261-365)||(36386534-36386638)
[»] chr5 (1 HSPs)
chr5 (263-354)||(35869626-35869714)
[»] chr6 (1 HSPs)
chr6 (279-332)||(32008940-32008993)
[»] chr4 (4 HSPs)
chr4 (280-352)||(10698258-10698330)
chr4 (280-352)||(10912025-10912097)
chr4 (280-350)||(10673830-10673900)
chr4 (280-350)||(10887470-10887540)
[»] chr2 (1 HSPs)
chr2 (277-332)||(14434984-14435039)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 36386884 - 36386709
Alignment:
Q  16 aacaatattaaagagacgaactgttgaaccatttgaagtctaaattttgaaagaatcaaccacgtggttagtctcacaaaagatatgagagattttgaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36386884 aacaatattaaagagacgaactgttgaaccatttgaagtctaaattttgaaagaatcaaccacgtggttagtctcacaaaagatatgagagattttgaac 36386785  T
Q  116 cctaaaagtattgctttaaacccattagttttggtcacaaaaccatagcaatggtgtctcgtattactcccttaat 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36386784 cctaaaagtattgctttaaacccattagttttggtcacaaaaccatagcaatggtgtctcgtattacccccttaat 36386709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 261 - 365
Target Start/End: Complemental strand, 36386638 - 36386534
Alignment:
Q  261 caacttcagtgcaagacgaatttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagacaccaatgttgtgaacctgctcttcttct 360  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36386638 caacttcagtgcgagacgaatttctcttaactcagaccttgtttcgaagatccaaacagtgaaaaggtagacaccaatgttgtgaacctgctcttctttt 36386539  T
Q  361 ctctc 365  Q
    |||||    
T  36386538 ctctc 36386534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 263 - 354
Target Start/End: Complemental strand, 35869714 - 35869626
Alignment:
Q  263 acttcagtgcaagacgaatttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagacaccaatgttgtgaacctgctct 354  Q
    |||||| ||| |||||||||||||||| || ||| ||||||||||||||   ||||   ||||||||||||| |||||||||||||||||||    
T  35869714 acttcaatgcgagacgaatttctcttagctgagaccttgtttcgaagatatgaaca---aaaaggtagacacaaatgttgtgaacctgctct 35869626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 32008993 - 32008940
Alignment:
Q  279 aatttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagac 332  Q
    |||||||||||||||| | |||||||||| ||||||||| ||||||||||||||    
T  32008993 aatttctcttaactcaaaccttgtttcgacgatccaaacggtgaaaaggtagac 32008940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 10698258 - 10698330
Alignment:
Q  280 atttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagacaccaatgttgtgaacctgct 352  Q
    |||||||| |||||||| ||||||||||  |||||||| |||||||||||||| |   |||||||||||||||    
T  10698258 atttctctcaactcagaccttgtttcgacaatccaaacggtgaaaaggtagacccaggtgttgtgaacctgct 10698330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 10912025 - 10912097
Alignment:
Q  280 atttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagacaccaatgttgtgaacctgct 352  Q
    |||||||| |||||||| ||||||||||  |||||||| |||||||||||||| |   |||||||||||||||    
T  10912025 atttctctcaactcagaccttgtttcgacaatccaaacggtgaaaaggtagacccaggtgttgtgaacctgct 10912097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 10673900 - 10673830
Alignment:
Q  280 atttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagacaccaatgttgtgaacctg 350  Q
    |||| ||| |||||||| |||||||||| |||||| || || ||||||||||| |  ||||||||||||||    
T  10673900 atttttctcaactcagaccttgtttcgacgatccagacggtcaaaaggtagacccagatgttgtgaacctg 10673830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 10887540 - 10887470
Alignment:
Q  280 atttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagacaccaatgttgtgaacctg 350  Q
    |||| ||| |||||||| |||||||||| |||||| || || ||||||||||| |  ||||||||||||||    
T  10887540 atttttctcaactcagaccttgtttcgacgatccagacggtcaaaaggtagacccagatgttgtgaacctg 10887470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 332
Target Start/End: Complemental strand, 14435039 - 14434984
Alignment:
Q  277 cgaatttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagac 332  Q
    ||||||||||| | |||||  |||||||||| ||||||||| ||||||||||||||    
T  14435039 cgaatttctctcagctcaggccttgtttcgacgatccaaacggtgaaaaggtagac 14434984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University