View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6191_low_27 (Length: 292)
Name: NF6191_low_27
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 28716555 - 28716814
Alignment:
| Q |
19 |
taaacgaagcttcaaaatttggggaaatgttggtgttcttctttagaggacaagaacaacaacccaaagnnnnnnnnnnnataagaaagaacaacaaccc |
118 |
Q |
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| T |
28716555 |
taaacgaagcttcaaaatttggggaaacattggtgttcttctttagaggacaagaacaacaacccaaagttttttttt---taagaaagaacaacaaccc |
28716651 |
T |
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| Q |
119 |
aaagttaatcacaagttaaatactcttcttacagctgatcgaaagcttcaatgggtaatttctacaacacattttaatctcaaatcttagaggacatgca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28716652 |
aaagttaatcacaagttaaatactcttcttacagctgatcgaaagcttcaatgtgtaatttctacaacacattttaatctcaaatcttagaggacatgca |
28716751 |
T |
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| Q |
219 |
cgaacgaattgtggtaaaatcataattatatataccttaaaaatagttctatttttggatatt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28716752 |
cgaacgaattgtggtaaaatcataattatatataccttaaaaatagttctatttttggatatt |
28716814 |
T |
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