View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6191_low_32 (Length: 279)
Name: NF6191_low_32
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 4100902 - 4101177
Alignment:
| Q |
1 |
ctaaagcaaaacatggatggactattatgaggtatgttcctgataacatctgcactgctatatccaatgaaatgggaagtggaacttgtggctataatag |
100 |
Q |
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| T |
4100902 |
ctaaagcaaaacaaggatggactattatgaggtatgttcctgataacatctgcactgctatattcaatgaaatgggtagtggaacttgtggctataatag |
4101001 |
T |
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| Q |
101 |
ctattgttccatggaaaatcagagacctac-tgtggttatcaatagagctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcat |
199 |
Q |
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| T |
4101002 |
ctattgttccatggaaaatcagagacctacttgtggttatcaatagagctattgtgttgaacacaaactttcggttacacattctcggaccggccttcat |
4101101 |
T |
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| Q |
200 |
ctttatttacctccactgtttccctcattatgcaaattcttctcactacgagatgctctcgacatattctccccttt |
276 |
Q |
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| T |
4101102 |
ctttatttacct-cactgtttcccttattatgcaaattcttctcactacgagatgctcttgacatattctccccttt |
4101177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 4129551 - 4129681
Alignment:
| Q |
1 |
ctaaagcaaaacatggatggactattatgaggtatgttcctgataacatctgcactgctatatccaatgaaatgggaagtggaacttgtggctataatag |
100 |
Q |
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| T |
4129551 |
ctaaagcaaaacaaggatggactattatgaggtatgttcctgataacatttgcattgcaatattcaatgaaatgggtagtggaacttgtggctataatag |
4129650 |
T |
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| Q |
101 |
ctattgttccatggaaaatcagagacctact |
131 |
Q |
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| T |
4129651 |
ctattgttccatggaaaatcagagacctact |
4129681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 4106364 - 4106494
Alignment:
| Q |
1 |
ctaaagcaaaacatggatggactattatgaggtatgttcctgataacatctgcactgctatatccaatgaaatgggaagtggaacttgtggctataatag |
100 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||||||||| |||| ||| |||| |||||||||||| ||||||||||||||||||||||| |
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| T |
4106364 |
ctaaagcaaaacaaggatggacgattatgaggtatgttcctgataacatttgcattgcaatattcaatgaaatgggtagtggaacttgtggctataatag |
4106463 |
T |
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| Q |
101 |
ctattgttccatggaaaatcagagacctact |
131 |
Q |
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| T |
4106464 |
ctattgttccatggaaaatcagagacctact |
4106494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 4109382 - 4109454
Alignment:
| Q |
136 |
ttatcaatagagctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttattta |
208 |
Q |
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| T |
4109382 |
ttatcaaaagtgctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttattta |
4109454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 4138504 - 4138565
Alignment:
| Q |
218 |
tttccctcattatgcaaattcttctcactacgagatgctctcgacatattctcccctttgct |
279 |
Q |
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| T |
4138504 |
tttccctcattctgcaaattcttctcactacgagatgctcttgacatattctcccctttgct |
4138565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 4132567 - 4132637
Alignment:
| Q |
136 |
ttatcaatagagctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttatt |
206 |
Q |
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| T |
4132567 |
ttatcaaaagagccattgtgttcaacacaaactttcgggggcacattctcagacctgacttcgtctttatt |
4132637 |
T |
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