View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6191_low_38 (Length: 249)
Name: NF6191_low_38
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_low_38 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 25328263 - 25328500
Alignment:
| Q |
5 |
ttaattttgtctatttgtcatttatttcaatctattacaatatggaaactcaaatagaaatttaaagtatgggaaagttttggtaccatacacaannnnn |
104 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25328263 |
ttaattttgtgtatttgtcatttatttcaatctattacaatatggaaactcaaatagaaatttaaagtatgggaaagttttggtaccatacacaattttt |
25328362 |
T |
|
| Q |
105 |
nngctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattcctagaaaatgaaatatattag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25328363 |
ttgctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattcctagaaaatgaaatatattag |
25328462 |
T |
|
| Q |
205 |
agcatcgtttaagtgtcaatcaaactctaaagaataat |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25328463 |
agcatcgtttaagtgtcaatcaaactctaaagaataat |
25328500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 25322609 - 25322686
Alignment:
| Q |
109 |
taacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattccta |
186 |
Q |
| |
|
||||||||||| |||| |||||||||||| |||||||||||||| || || ||||||||||||| || |||||||| |
|
|
| T |
25322609 |
taacccatcctccatattcatcctcaagtttttgtggtagatcccaatgatgtaatgtaacatgtggttggattccta |
25322686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 5219785 - 5219863
Alignment:
| Q |
108 |
ctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattccta |
186 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||| ||||||||||||||||| | || |||||||||| || |||||||| |
|
|
| T |
5219785 |
ctaacccatcctccatattcatcttcaagtgcttgtggtagatcccagtgatttaaagtaacatgtggttggattccta |
5219863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 39641993 - 39641915
Alignment:
| Q |
108 |
ctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattccta |
186 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| |||||| ||||| ||| ||| | ||| ||||||| || |||||||| |
|
|
| T |
39641993 |
ctaagccatccttcatattcatcctcaagtgcctgtgggagatcatagttgtgtagtgtgacatgtggttggattccta |
39641915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 29122350 - 29122273
Alignment:
| Q |
108 |
ctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattcct |
185 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| |||||| ||||| ||| ||| | ||| ||||||| || ||||||| |
|
|
| T |
29122350 |
ctaagccatccttcatattcatcctcaagtgcctgtgggagatcatagttgtgtagtgtgacatgtggttggattcct |
29122273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University