View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6191_low_42 (Length: 242)
Name: NF6191_low_42
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_low_42 |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0455 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 19991003 - 19990772
Alignment:
| Q |
17 |
ataaatgtgtttgtgcgtaaaagcatagcaacatatatatat------gtcagtctgtcaagccgatcttactaaagataaataacacaagcataggaga |
110 |
Q |
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| T |
19991003 |
ataaatgtgtgtgtgcgtaaaagcatagcaacatatatatatatatatgtcagtctgtcaagccgatcttactaaagataaataacacaagcataggaga |
19990904 |
T |
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| Q |
111 |
taataaaaacattatatcataagtcatctaaattagtcatacttactctttcaattgttatcgacatgagggtatgaaaagactcactatcacaagtttc |
210 |
Q |
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| T |
19990903 |
taataaaaacattatatcataagtcatctaaattagtcatacttactctttcaattgttatcaacatgagggtatgaaaagactcactatcacaagtttc |
19990804 |
T |
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| Q |
211 |
ataacgagagttttgaaaccaaatagtgtttt |
242 |
Q |
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| T |
19990803 |
ataaagagagttttgaaaccaaatagtgtttt |
19990772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 20032723 - 20032821
Alignment:
| Q |
76 |
atcttactaaagataaataacacaagcataggagataataaaaac--attatatcataagtcatctaaattagtcatacttactctttcaattgttatc |
172 |
Q |
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| T |
20032723 |
atcttactaaagataaataacacaatcatagaatataataaaaacatattatatgataactcatctaaaccagtgttactttttctttcacttgttatc |
20032821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 20006692 - 20006755
Alignment:
| Q |
83 |
taaagataaataacacaagcataggagataataaaaacattatatcataagtcatctaaattagt |
147 |
Q |
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| T |
20006692 |
taaagatagataacacaagcatagcagataataaaaaca-tatatcataacttatctaaactagt |
20006755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 19952924 - 19952882
Alignment:
| Q |
80 |
tactaaagataaataacacaagcataggagataataaaaacat |
122 |
Q |
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| T |
19952924 |
tactatagataaataacacaagcatagcagaaaataaaaacat |
19952882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 9816755 - 9816697
Alignment:
| Q |
79 |
ttactaaagataaataacacaagcataggagataataaaaacattatatcataagtcat |
137 |
Q |
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| T |
9816755 |
ttactaaagataaataaggcaagcatagaagataataaaaacattatatcataactcat |
9816697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 12137 - 12093
Alignment:
| Q |
80 |
tactaaagataaataacacaagcataggagataataaaaacatta |
124 |
Q |
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| T |
12137 |
tactaaagataaataagaaaagcatagcagataataaaaacatta |
12093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 28134101 - 28134057
Alignment:
| Q |
80 |
tactaaagataaataacacaagcataggagataataaaaacatta |
124 |
Q |
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| T |
28134101 |
tactaaagataaataagaaaagcatagcagataataaaaacatta |
28134057 |
T |
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