View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6191_low_43 (Length: 241)
Name: NF6191_low_43
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25328045 - 25327819
Alignment:
| Q |
1 |
attcctcaactgagccatatttggcagctcatcatatgttgttagcacatgcttcagctgcaagattgtataggaagaaatataaggtagaagttatgta |
100 |
Q |
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| T |
25328045 |
attcctcagctgagccatatttggtagctcatcatatgttgttagcacatgcttcagctgcaagattgtataggaagaaatataaggtagaagttatgta |
25327946 |
T |
|
| Q |
101 |
gaacatgcaccactttacttacaatctatttctgtttcattttgaatatagttcttaatcataatttgataaatatgttcatgaagcaatctttctaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
25327945 |
gaacatgcaccactttacttacaatctatttctgtttcattttgaatatagttcttaatcataatttgattaatatgttcatgaagaaatctttctaaag |
25327846 |
T |
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| Q |
201 |
tgcagggcatgcaacatggatttattg |
227 |
Q |
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| T |
25327845 |
tgcagggcatgcaacatggatttattg |
25327819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 25322182 - 25322094
Alignment:
| Q |
1 |
attcctcaactgagccatatttggcagctcatcatatgttgttagcacatgcttcagctgcaagattgtataggaagaaatataaggta |
89 |
Q |
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| T |
25322182 |
attcctcaactgagccatatttggtagctcatcatatgttgttagcacatgcttcatctgcaagattgtataggaaaaaatataaggta |
25322094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 9989115 - 9989206
Alignment:
| Q |
33 |
catatgttgttagcacatgcttcagctgcaagattgtataggaagaaatataaggtagaagttatgtagaacatgcaccactttacttacaat |
125 |
Q |
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| T |
9989115 |
catatgttattagcacatgcttcagctgcaacgttgtataagaaaaaatataaggta-aatttatgtagaaaatgcaccacttcacttacaat |
9989206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 9989258 - 9989312
Alignment:
| Q |
174 |
tatgttcatgaagcaatctttctaaagtgcagggcatgcaacatggatttattga |
228 |
Q |
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| T |
9989258 |
tatgttcaagaagcaatctttctaaagtacaggtcatgcaacatggcattattga |
9989312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 25322042 - 25321986
Alignment:
| Q |
171 |
aaatatgttcatgaagcaatctttctaaagtgcagggcatgcaacatggatttattg |
227 |
Q |
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| T |
25322042 |
aaatatgtttatgaaaccatctttattaagtgtagggcatgcaacatggatttattg |
25321986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 14332148 - 14332239
Alignment:
| Q |
33 |
catatgttgttagcacatgcttcagctgcaagattgtataggaagaaatataaggtagaagttatgtagaacatgcaccactttacttacaat |
125 |
Q |
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| T |
14332148 |
catatgttattagcacatgcttgagctgcaatgttgtataagaaaaaatataaggta-aatttatgtagaaaatgcaccacttcacttacaat |
14332239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 14332291 - 14332336
Alignment:
| Q |
174 |
tatgttcatgaagcaatctttctaaagtgcagggcatgcaacatgg |
219 |
Q |
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| T |
14332291 |
tatgttcaagaagcaatctttctaaagtacaggtcatgcaacatgg |
14332336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 5219182 - 5219094
Alignment:
| Q |
1 |
attcctcaactgagccatatttggcagctcatcatatgttgttagcacatgcttcagctgcaagattgtataggaagaaatataaggta |
89 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||| ||||| | ||||||||| |
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| T |
5219182 |
attcttcaactgagccatatttggttactcatcatatgttgttagcacatgcatcagctacaagactgtacaggaaaatgtataaggta |
5219094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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