View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6191_low_44 (Length: 238)
Name: NF6191_low_44
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 15172278 - 15172495
Alignment:
| Q |
5 |
aaaaatgacccttaaactttgtttttatcatagatcaatatgaaagggcttgatggtattcaaggtccagtgtatgtcggtaccggaactgtgttcaaca |
104 |
Q |
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| T |
15172278 |
aaaaatgaccctgaaatgttgcttttatcatagatcaatatgaaagggcttgatggtattcaaggtccagtgtatgtcggtaccggaactgtgttcaaca |
15172377 |
T |
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| Q |
105 |
gacaagcattgtatggatatgatccaccagtttccgagaaaaggccaaagatgacatgtgattgttggcctaaatggtgttgcttttgttgtggttcaag |
204 |
Q |
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| T |
15172378 |
gacaagcattgtatggatatgatccaccagtttccgagaaaaggccaaagatgacatgtgattgttggcctaaatggtgttgcttttgttgtggttcaag |
15172477 |
T |
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| Q |
205 |
gaaaaccaaatcaaaaaa |
222 |
Q |
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|||||||||||||||||| |
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| T |
15172478 |
gaaaaccaaatcaaaaaa |
15172495 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 30258495 - 30258593
Alignment:
| Q |
35 |
tagatcaatatgaaagggcttgatggtattcaaggtccagtgtatgtcggtaccggaactgtgttcaacagacaagcattgtatggatatgatccacca |
133 |
Q |
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| T |
30258495 |
tagatcaacatgaaatgccttgatggaattcaaggtccagtgtatgttggtactggatgtgtgttcaacaggcaggcattatatggctataagccacca |
30258593 |
T |
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