View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6191_low_50 (Length: 209)

Name: NF6191_low_50
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6191_low_50
NF6191_low_50
[»] chr5 (6 HSPs)
chr5 (18-203)||(4100449-4100634)
chr5 (30-154)||(4146462-4146586)
chr5 (32-109)||(2326360-2326437)
chr5 (37-154)||(39576313-39576430)
chr5 (32-96)||(39572365-39572429)
chr5 (35-151)||(225307-225422)
[»] chr8 (3 HSPs)
chr8 (32-154)||(9841939-9842058)
chr8 (32-105)||(27360973-27361046)
chr8 (32-110)||(9860620-9860699)
[»] scaffold0658 (1 HSPs)
scaffold0658 (32-105)||(2851-2924)
[»] chr1 (3 HSPs)
chr1 (32-113)||(5054214-5054295)
chr1 (32-153)||(46445947-46446068)
chr1 (32-153)||(46672099-46672220)
[»] chr3 (1 HSPs)
chr3 (32-99)||(7256841-7256908)
[»] chr6 (1 HSPs)
chr6 (32-87)||(112639-112694)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 4100449 - 4100634
Alignment:
Q  18 ccaatcaatcgcaaaatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaatgca 117  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4100449 ccaagcaatcgcaaaatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaatgca 4100548  T
Q  118 tcattattcactatgcaagaaagatgatttcccatccttattttaatgatgggaggttccaactttattttaatgatgatgtccat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4100549 tcattattcactatgcaagaaagatgatttcccatccttattttaatgatgggaggttccaactttattttaatgatgatgaccat 4100634  T

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Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 4146586 - 4146462
Alignment:
Q  30 aaaatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaatgcatcattattcact 129  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||     
T  4146586 aaaatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttgaaatgttctacaaaatgcatcattattcaca 4146487  T
Q  130 atgcaagaaagatgatttcccatcc 154  Q
    ||||||||||| |||||||||||||    
T  4146486 atgcaagaaaggtgatttcccatcc 4146462  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 2326360 - 2326437
Alignment:
Q  32 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctat 109  Q
    ||||||| ||||||||||||| |||||||||| |||||||| | ||||||| ||||||||||||||||||||||||||    
T  2326360 aatcaaatggtcccatctcatgataaagagacaattttcctgaatcaaaattcaaaatgtagatttgaaatgttctat 2326437  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 39576430 - 39576313
Alignment:
Q  37 aaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctat-aaaatgcatcattattcactatgcaa 135  Q
    |||||||||||||||| |||||||||||||| |||| | |||||||||||| ||||||||||| || || | | |||||| ||| |||| ||| ||||||    
T  39576430 aaaggtcccatctcatgataaagagaccattctcctgaatcaaaatccaaagtgtagatttgatatcttttctgaaaatg-atctttatacacaatgcaa 39576332  T
Q  136 gaaagatgatttcccatcc 154  Q
    ||||||  |||||||||||    
T  39576331 gaaagacaatttcccatcc 39576313  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 39572429 - 39572365
Alignment:
Q  32 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatt 96  Q
    ||||||||||||||||||||| |||| |||||||||||| | | |||||||||||||||||||||    
T  39572429 aatcaaaaggtcccatctcatgataaggagaccattttcttgaatcaaaatccaaaatgtagatt 39572365  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 225422 - 225307
Alignment:
Q  35 caaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaatgcatcattattcactatgca 134  Q
    |||||||||  ||||||| ||||||||||||||||| |   |||||||| || |||||||| | |||| || ||||| | ||||| |||  ||| |||||    
T  225422 caaaaggtcagatctcatgataaagagaccattttcttgcatcaaaatctaacatgtagatatcaaatctt-tataataagcatctttacacacaatgca 225324  T
Q  135 agaaagatgatttccca 151  Q
    |||||||  ||||||||    
T  225323 agaaagaaaatttccca 225307  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 9842058 - 9841939
Alignment:
Q  32 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaatgcatcattattcactat 131  Q
    ||||||||||||||||||||| || |||||||||||||||| | |||||||||| ||||||||||||| |||| ||||||   | ||| ||| || | ||    
T  9842058 aatcaaaaggtcccatctcatgatgaagagaccattttcctgaatcaaaatccagaatgtagatttgatatgtactataa---gtatctttagtcgcaat 9841962  T
Q  132 gcaagaaagatgatttcccatcc 154  Q
    |||||||||  ||||||||||||    
T  9841961 gcaagaaaggcgatttcccatcc 9841939  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 27361046 - 27360973
Alignment:
Q  32 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgtt 105  Q
    ||||||||||||||||||||| |||||||  |||||||||||| |||||||||||| | ||||||||| |||||    
T  27361046 aatcaaaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatatgtt 27360973  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 9860699 - 9860620
Alignment:
Q  32 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtaga-tttgaaatgttctata 110  Q
    ||||||||||||||||||||| ||||||||||||||||||| | |||  |||||||||| | | ||||| ||||||||||    
T  9860699 aatcaaaaggtcccatctcatgataaagagaccattttcctgaatcatgatccaaaatgaatattttgatatgttctata 9860620  T

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Target: scaffold0658 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 2851 - 2924
Alignment:
Q  32 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgtt 105  Q
    ||||||||||||||||||||| |||||||  |||||||||||| |||||||||||| | ||||||||| |||||    
T  2851 aatcaaaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatatgtt 2924  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 5054214 - 5054295
Alignment:
Q  32 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaa 113  Q
    ||||||||||||||||||||| |||| |||||||||||||    |||||||||||||| ||||| ||||||||| |||||||    
T  5054214 aatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatatagatctgaaatgttgtataaaa 5054295  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 46446068 - 46445947
Alignment:
Q  32 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaatgcatcattattcactat 131  Q
    |||||||| |||||||||||| ||||||||||||||  ||  | |||||||||||||||||||||||| ||| |  ||||| | |||| ||||   | ||    
T  46446068 aatcaaaatgtcccatctcatgataaagagaccattcccccgaatcaaaatccaaaatgtagatttgatatgcttcataaatttcatctttatatgcaat 46445969  T
Q  132 gcaagaaagatgatttcccatc 153  Q
    |||||||||||||| |||||||    
T  46445968 gcaagaaagatgatctcccatc 46445947  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 46672099 - 46672220
Alignment:
Q  32 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaatgcatcattattcactat 131  Q
    |||||||| |||||||| ||| ||| ||||||||||||||| | |||||||||||||||||||||||| ||| |  || || |  ||| || | ||| ||    
T  46672099 aatcaaaatgtcccatcgcatgatagagagaccattttcctgaatcaaaatccaaaatgtagatttgatatgcttcattaattttatctttgtacacaat 46672198  T
Q  132 gcaagaaagatgatttcccatc 153  Q
    ||||||||| ||||||||||||    
T  46672199 gcaagaaaggtgatttcccatc 46672220  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 7256908 - 7256841
Alignment:
Q  32 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttga 99  Q
    |||||||||||||||||  || ||||||||||||||||| | | |||||||| |||||||||||||||    
T  7256908 aatcaaaaggtcccatcatatgataaagagaccattttcttgaatcaaaatctaaaatgtagatttga 7256841  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 112639 - 112694
Alignment:
Q  32 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaa 87  Q
    |||||||||| |||||||||| |||||||| |||||||||||| || |||||||||    
T  112639 aatcaaaaggccccatctcatgataaagagtccattttcctaaatccaaatccaaa 112694  T

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