View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6191_low_6 (Length: 508)
Name: NF6191_low_6
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 15 - 492
Target Start/End: Complemental strand, 4213932 - 4213448
Alignment:
| Q |
15 |
tcagaaatctatccaaaactaaaattatattatacataaactcaccttttccccctttgattaagataagtataattctaaattttccttttgataacca |
114 |
Q |
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| T |
4213932 |
tcagaaatctatccaaaactaaaattatattatacataaacccaccttttccccctttgattaagataagtataattctaaattttccttttgataacca |
4213833 |
T |
|
| Q |
115 |
aaaatgaaaaagaatta-caatatttttgtggtgttaaaagagagggctaaacgccaaaacaaggaaaactaaaaaccaagggggaactgaatagctgag |
213 |
Q |
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| T |
4213832 |
aaaatgaaaaagaattagcaatatttttgtggtgttaaaagagagggctaaacgccaaaacaaggaaaactaaaaaccaagggggaactgaacagctgag |
4213733 |
T |
|
| Q |
214 |
agatcagcgtagaaataaaatgcagaacaaaatagaacattctagtggacctaacaagagacaagccgatattagctaagccatccgccacttggttggc |
313 |
Q |
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| T |
4213732 |
agatcagcgtagaaataaaatgcagaacaaaatagaacattctagtggacctaacaagagacaagccgatattagctaagccatccgccacttggttggc |
4213633 |
T |
|
| Q |
314 |
ttcacacaaatatgagaccacaaaacaattagcaatttagcataatacacgtatgaatattatatatat------actacatgaatataggaatccctta |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4213632 |
ttcacacaaatatgagaccacaaaacaattagcaatttagcataatacacgtatgaatattatatatatatatacactacatgaatataggaatccctta |
4213533 |
T |
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| Q |
408 |
tgtgattcaatgaccacattatcaaactttgccacnnnnnnnccaaagatcccaatgcatcagcaaaccacaaatataatgaaag |
492 |
Q |
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| T |
4213532 |
tgtgattcaatgaccacattatcaaactttgccacaaaaaaaacaaagatcccaatgcatcagcaaaccacaaatataatgaaag |
4213448 |
T |
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