View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6191_low_8 (Length: 505)
Name: NF6191_low_8
Description: NF6191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6191_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 91 - 488
Target Start/End: Original strand, 4387972 - 4388362
Alignment:
| Q |
91 |
tgcttctgtaaagaacttgttcctcggcttactatgttttgctttctccatgattcaacaaattgtttgattggagtcacaaaggaaggcagagcgacac |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4387972 |
tgcttctgtaaagaacttgttcctcggcttactatgttttgctttctccatgattaaacaaattgtttgattggagtcacaaaggaaggcagagcgacac |
4388071 |
T |
|
| Q |
191 |
aaatcaacacaatcattgatgagatgataggatcaacaaaagaggcacccataaaacacaaagaagtgtttggtgggcggaagaattttaannnnnnnnn |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4388072 |
aaatcaacacaatcattgatgagatgataggatcaac-aaagaggcacccataacacacaaagaagtgtttggtgggcggaagaattttaatttttttt- |
4388169 |
T |
|
| Q |
291 |
gtgtgttaagcttccggttcctaggggaagggggctcctagtaattaagaagttctaccgaaagttaagtaaagcttagcaaagaattgttcccaccaga |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4388170 |
-tgtgttaagcttccggttcctaggggaagggggctcctagtaattaggaagttctaccgaaagttaagtaaagcttagcaaagaattgttcccaccaga |
4388268 |
T |
|
| Q |
391 |
attcgaacttgtgctttgtttatcgataataatcatccaagcttatgtcacataaatcttacgaaaatacttacatgcatctcaaggaaaaaacaata |
488 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4388269 |
attcggacttgtgctttgtttatcgataataatcatccaagcttatgtcacataaatcttacgaaaatactta----catctcaaggaaaaaacaata |
4388362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University