View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6192_high_11 (Length: 326)
Name: NF6192_high_11
Description: NF6192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6192_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 1155463 - 1155150
Alignment:
| Q |
7 |
gtgagatgaaagaagcgattgcagttctaaccggtgcgacgaagaatgtgaagatcaatggcggcgagatcgagaaagagaagaagatctatcgtattca |
106 |
Q |
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| T |
1155463 |
gtgagatgaaagaagcgattgcagttctaaccggtgcgacgaagaatgtgaagatcaatggcggcgagatcgagaaagagaagaagatctatcgtattca |
1155364 |
T |
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| Q |
107 |
agtttccaagactaagaagcctctcttcttctaccttaacatcgctaaggtaattaggttttcgattttgattcaatcgctttttcttcatttcgnnnnn |
206 |
Q |
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| T |
1155363 |
agtttccaagactaagaagccactcttcttctaccttaacatcgctaaggtaattaggttttcgattttgattaaatcgccgtttcttcatttcgttttt |
1155264 |
T |
|
| Q |
207 |
nnnatttctgattatgaatttcgtgtttctttctgattcagaaacacttgaagctggataatgatgttgagctctgtgctttgggaactggtataatttt |
306 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1155263 |
ttcatttctgattatggatttcgtgtttctttctgattcagaaacacttgaagctggataatgatgttgagctctgtgctttgggaactggtataatttt |
1155164 |
T |
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| Q |
307 |
ctttaatcctttta |
320 |
Q |
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| T |
1155163 |
ctttaatcctttta |
1155150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 38664985 - 38665051
Alignment:
| Q |
229 |
gtgtttctttctgattcagaaacacttgaagctggataatgatgttgagctctgtgctttgggaact |
295 |
Q |
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| T |
38664985 |
gtgtttctttctgattcagaaacacttgaagctggataatgatgttgagctctatgctttgggaact |
38665051 |
T |
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