View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6192_high_3 (Length: 438)

Name: NF6192_high_3
Description: NF6192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6192_high_3
NF6192_high_3
[»] chr1 (8 HSPs)
chr1 (113-389)||(22787424-22787700)
chr1 (110-385)||(6154067-6154342)
chr1 (119-253)||(7786476-7786610)
chr1 (119-196)||(1017121-1017198)
chr1 (114-167)||(11943666-11943720)
chr1 (116-154)||(18431242-18431280)
chr1 (111-156)||(5458618-5458663)
chr1 (206-262)||(2341951-2342007)
[»] chr3 (10 HSPs)
chr3 (113-389)||(26557409-26557685)
chr3 (113-332)||(2125587-2125806)
chr3 (111-265)||(25911067-25911222)
chr3 (113-256)||(52119021-52119167)
chr3 (110-196)||(25070827-25070913)
chr3 (113-198)||(28210880-28210965)
chr3 (112-196)||(26903063-26903147)
chr3 (112-196)||(36617893-36617977)
chr3 (211-265)||(37586375-37586429)
chr3 (111-167)||(49430477-49430534)
[»] chr5 (8 HSPs)
chr5 (113-389)||(9047488-9047764)
chr5 (114-385)||(423987-424259)
chr5 (120-357)||(25633575-25633811)
chr5 (210-357)||(18108418-18108565)
chr5 (277-389)||(17076895-17077007)
chr5 (209-264)||(36387048-36387103)
chr5 (112-150)||(18108361-18108399)
chr5 (114-151)||(17077002-17077039)
[»] chr8 (5 HSPs)
chr8 (113-389)||(11462730-11463006)
chr8 (113-386)||(28535809-28536081)
chr8 (113-196)||(45486311-45486394)
chr8 (212-347)||(31550002-31550138)
chr8 (148-198)||(2148338-2148388)
[»] chr6 (7 HSPs)
chr6 (113-362)||(16693399-16693648)
chr6 (210-389)||(10773908-10774085)
chr6 (112-196)||(18816825-18816909)
chr6 (8-52)||(4140309-4140353)
chr6 (111-154)||(5013726-5013769)
chr6 (112-167)||(595756-595812)
chr6 (217-261)||(14902608-14902652)
[»] chr7 (8 HSPs)
chr7 (113-244)||(38663274-38663405)
chr7 (110-196)||(39781114-39781200)
chr7 (113-196)||(43266050-43266133)
chr7 (111-167)||(42896847-42896904)
chr7 (116-154)||(46437784-46437822)
chr7 (217-318)||(12931542-12931634)
chr7 (115-186)||(8256525-8256597)
chr7 (116-167)||(46357785-46357837)
[»] chr4 (5 HSPs)
chr4 (117-186)||(8904393-8904463)
chr4 (148-189)||(33517983-33518024)
chr4 (130-198)||(35390412-35390481)
chr4 (120-155)||(45065888-45065923)
chr4 (148-189)||(52849839-52849880)
[»] chr2 (4 HSPs)
chr2 (210-345)||(41793301-41793436)
chr2 (116-154)||(16915978-16916016)
chr2 (148-189)||(16639308-16639349)
chr2 (217-261)||(21610136-21610180)
[»] scaffold0571 (1 HSPs)
scaffold0571 (113-154)||(120-161)
[»] scaffold0009 (1 HSPs)
scaffold0009 (217-261)||(48495-48539)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 113 - 389
Target Start/End: Original strand, 22787424 - 22787700
Alignment:
Q  113 caggggcggatctagatatttcatattagtgtggcaaaatttt-aaagaaactataatacaaattatactaaaaataatatataacannnnnnnacgaca 211  Q
    |||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||       ||| ||    
T  22787424 caggggcggatctagacatgtcatattagtgtggcaaaatttttaaagaaactataatacaa-ttatactaaaaataatatataacatttttttacggca 22787522  T
Q  212 aatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaatggcagaaaatacaaaagtgaccgtatataggcggcacacttaaac 311  Q
    |||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  22787523 aatattattcatcgtcgagagggtgtaagacgcacccacaactcgcggaaaaaacggcagaaaatataaaagtgaccgtatataggcggcacacttaaac 22787622  T
Q  312 accaaaaccactcagtcatgatgccggaatatacaaaaagcaaaatgccagaataagaatacccctgcatcacaaccg 389  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||    
T  22787623 accaaaaccactcggtcatgatgccggaatatacaacaagcaaaatgccagcagaagtatacccctgcatcacaaccg 22787700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 110 - 385
Target Start/End: Original strand, 6154067 - 6154342
Alignment:
Q  110 gatcaggggcggatctagatatttcatattagtgtggcaaaattttaaag-aaactataatacaaattatactaaaaataatatataacannnnnnnacg 208  Q
    ||||| ||| ||||||||| ||||||||||||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||||||       ||     
T  6154067 gatcatgggtggatctagacatttcatattagtgtggcaaattttttaaggaaactataatacgaattatactaaaaataatatataacatttttttact 6154166  T
Q  209 acaaatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaatggcagaaaatacaaaagtgaccgtatataggcggcacactta 308  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||    
T  6154167 gcaaatattattcatcgtcgagagggtgtaagacacgcccacaactcgcggaaaaac-ggtagaaaatacaaaagtgaccgtatataggcggcacactta 6154265  T
Q  309 aacaccaaaaccactcagtcatgatgccggaatatacaaaaagcaaaatgccagaataagaatacccctgcatcaca 385  Q
    ||||||||||||||||  ||||||||||| ||||||||| |||||||||||||| | ||| ||||||||||||||||    
T  6154266 aacaccaaaaccactcgatcatgatgccgaaatatacaacaagcaaaatgccagcagaagtatacccctgcatcaca 6154342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 119 - 253
Target Start/End: Original strand, 7786476 - 7786610
Alignment:
Q  119 cggatctagatatttcatattagtgtggcaaaatttt-aaagaaactataatacaaattatactaaaaataatatataacannnnnnnacgacaaatatt 217  Q
    |||||||| | ||| ||||||||||||||||| |||| ||||||||||||||| || ||||||||||||||||||||||||       ||| ||||||||    
T  7786476 cggatctaaacattgcatattagtgtggcaaattttttaaagaaactataatataa-ttatactaaaaataatatataacatttttttacggcaaatatt 7786574  T
Q  218 attcatcgtcgatagggtgtaagacacgcccacaac 253  Q
    |||||||||||| ||||||||||||||  |||||||    
T  7786575 attcatcgtcgagagggtgtaagacacatccacaac 7786610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 1017198 - 1017121
Alignment:
Q  119 cggatctagatatttcatattagtgtggcaaaa-ttttaaagaaactataatacaaattatactaaaaataatatataa 196  Q
    ||||| |||| ||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  1017198 cggatttagacattgcatattagtgtggcaaaatttttaaagaaactataatac-aattatactaaaaataatatataa 1017121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 11943666 - 11943720
Alignment:
Q  114 aggggcggatctagatatttcatattagtgtggcaaaatttt-aaagaaactata 167  Q
    ||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||    
T  11943666 aggggcggatctagacatttgatattagtgtggcaaaattttcaaacaaactata 11943720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 18431242 - 18431280
Alignment:
Q  116 gggcggatctagatatttcatattagtgtggcaaaattt 154  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  18431242 gggcggatctagacatttcatattagtgtggcaaaattt 18431280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 5458618 - 5458663
Alignment:
Q  111 atcaggggcggatctagatatttcatattagtgtggcaaaatttta 156  Q
    ||||||||||||| |||| |||| ||||| ||||||||||||||||    
T  5458618 atcaggggcggatgtagacatttgatattggtgtggcaaaatttta 5458663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 2342007 - 2341951
Alignment:
Q  206 acgacaaatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaa 262  Q
    |||||||||||||||| ||||||| |||| |||||| ||||| |  |||||||||||    
T  2342007 acgacaaatattattcttcgtcgagagggcgtaagaaacgccaagcactcgcggaaa 2341951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 113 - 389
Target Start/End: Complemental strand, 26557685 - 26557409
Alignment:
Q  113 caggggcggatctagatatttcatattagtgtggcaaaatttt-aaagaaactataatacaaattatactaaaaataatatataacannnnnnnacgaca 211  Q
    |||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||       ||| ||    
T  26557685 caggggcggatctagacatgtcatattagtgtggcaaaatttttaaagaaactataatacaa-ttatactaaaaataatatataacatttttttacggca 26557587  T
Q  212 aatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaatggcagaaaatacaaaagtgaccgtatataggcggcacacttaaac 311  Q
    |||||||||||||||||| |||||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26557586 aatattattcatcgtcgagagggtgtaagacgcacccacaacttgcggaaaaaacggcagaaaatacaaaagtgaccgtatataggcggcacacttaaac 26557487  T
Q  312 accaaaaccactcagtcatgatgccggaatatacaaaaagcaaaatgccagaataagaatacccctgcatcacaaccg 389  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||| | ||| | ||||||||||||||||||    
T  26557486 accaaaaccactcggtcatgatgccggaatatacaacaagcaaaatgccagcagaagtacacccctgcatcacaaccg 26557409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 113 - 332
Target Start/End: Complemental strand, 2125806 - 2125587
Alignment:
Q  113 caggggcggatctagatatttcatattagtgtggcaaaatttt-aaagaaactataatacaaattatactaaaaataatatataacannnnnnnacgaca 211  Q
    |||||||||||||||| ||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||       ||| ||    
T  2125806 caggggcggatctagacattgcatattagtgtggcaaattttttaaagaaactataatacaa-ttatactaaaaataatatataacatttttttacggca 2125708  T
Q  212 aatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaatggcagaaaatacaaaagtgaccgtatataggcggcacacttaaac 311  Q
    |||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  2125707 aatattattcattgtcgagagggtgtaagacacacccacaactcgcggaaaaaacggcagaaaatacaaaagtgatcgtatataggcggcacacttaaac 2125608  T
Q  312 accaaaaccactcagtcatga 332  Q
    ||||||||||||| |||||||    
T  2125607 accaaaaccactcggtcatga 2125587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 111 - 265
Target Start/End: Complemental strand, 25911222 - 25911067
Alignment:
Q  111 atcaggggcggatctagatatttcatattagtgtggcaaaatttt-aaagaaactataatacaaattatactaaaaataatatataacannnnnnnacga 209  Q
    |||||||| ||||||| | |||| |||||||||||  ||| |||| |||||||||| ||||||||||||||||||||||||||||||||       | ||    
T  25911222 atcaggggtggatctacacattttatattagtgtgataaattttttaaagaaactaaaatacaaattatactaaaaataatatataacatttttttatga 25911123  T
Q  210 caaatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaa 265  Q
    ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||    
T  25911122 caaatattattcatcgttgagagggtgtaagacacgcccacaactcgtggaaaaaa 25911067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 113 - 256
Target Start/End: Complemental strand, 52119167 - 52119021
Alignment:
Q  113 caggggcggatctagatatttcatattagtgtggcaaaattttaaa----gaaactataatacaaattatactaaaaataatatataacannnnnnnacg 208  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||    ||||||||||||||  ||||||||||||||||||||||||       |||    
T  52119167 caggggcggatctagacatgtcatattagtgtggcaaaatttttaaagaagaaactataatacag-ttatactaaaaataatatataacatttttttacg 52119069  T
Q  209 acaaatattattcatcgtcgatagggtgtaagacacgcccacaactcg 256  Q
     |||||||||||||||||||| |||||||||||| | |||||||||||    
T  52119068 gcaaatattattcatcgtcgagagggtgtaagacgcacccacaactcg 52119021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 25070913 - 25070827
Alignment:
Q  110 gatcaggggcggatctagatatttcatattagtgtggcaaaa-ttttaaagaaactataatacaaattatactaaaaataatatataa 196  Q
    ||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  25070913 gatcaggggcggatctagacattgcatattagtgtggcaaaatttttaaagaaactataatac-aattatactaaaaataatatataa 25070827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 28210880 - 28210965
Alignment:
Q  113 caggggcggatctagatatttcatattagtgtggcaaaa-ttttaaagaaactataatacaaattatactaaaaataatatataaca 198  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  28210880 caggggcggatctagacattgcatattagtgtggcaaaatttttaaagaaactataatac-aattatactaaaaataatatataaca 28210965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 26903063 - 26903147
Alignment:
Q  112 tcaggggcggatctagatatttcatattagtgtggcaaaa-ttttaaagaaactataatacaaattatactaaaaataatatataa 196  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  26903063 tcaggggcggatctagacattgcatattagtgtggcaaaatttttaaagaaactataata-aaattatactaaaaataatatataa 26903147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 36617977 - 36617893
Alignment:
Q  112 tcaggggcggatctagatatttcatattagtgtggcaaaa-ttttaaagaaactataatacaaattatactaaaaataatatataa 196  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  36617977 tcaggggcggatctagacattgcatattagtgtggcaaaatttttaaagaaactataata-aaattatactaaaaataatatataa 36617893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 37586375 - 37586429
Alignment:
Q  211 aaatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaa 265  Q
    ||||||||||||||| ||| |||||||||||||| |||| |||||||||||||||    
T  37586375 aaatattattcatcgacgagagggtgtaagacactcccaaaactcgcggaaaaaa 37586429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 49430477 - 49430534
Alignment:
Q  111 atcaggggcggatctagatatttcatattagtgtggcaaaattt-taaagaaactata 167  Q
    |||||||||||||||||| | || ||||| ||||| |||||||| |||||||||||||    
T  49430477 atcaggggcggatctagagagttgatattggtgtgacaaaatttgtaaagaaactata 49430534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 113 - 389
Target Start/End: Original strand, 9047488 - 9047764
Alignment:
Q  113 caggggcggatctagatatttcatattagtgtggcaaaatttt-aaagaaactataatacaaattatactaaaaataatatataacannnnnnnacgaca 211  Q
    |||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||||||||||       ||| ||    
T  9047488 caggggcggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaa-ttatactaaaattaatatataacatttttttacggca 9047586  T
Q  212 aatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaatggcagaaaatacaaaagtgaccgtatataggcggcacacttaaac 311  Q
    |||||||||||||||||| ||| |||||||| | |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  9047587 aatattattcatcgtcgagaggatgtaagacgcacccacaactcgcggaaaaaacgacagaaaatacaaaagtgaccgtatataggcggcacacttaaac 9047686  T
Q  312 accaaaaccactcagtcatgatgccggaatatacaaaaagcaaaatgccagaataagaatacccctgcatcacaaccg 389  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||||    
T  9047687 accaaaaccactcggtcatgatgccggaatatacaacaagcaaaatgtcagcataagtatacccctgcatcacaaccg 9047764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 114 - 385
Target Start/End: Original strand, 423987 - 424259
Alignment:
Q  114 aggggcggatctagatatttcatattagtgtggcaaaatttt-aaagaaactataatacaaattatactaaaaataatatataacannnnnnnacgacaa 212  Q
    ||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||       ||| |||    
T  423987 aggggcggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacgaattatactaaaaataatatataacatttttttacggcaa 424086  T
Q  213 atattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaatggcagaaaatacaaaagtgaccgtatataggcggcacacttaaaca 312  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  424087 atattattcatcgtcgagagggtgtaagacacgcccacgactcgcggaaaaaacggcagaaaatacaaaagtgaccgcatataggtggcacacttaaaca 424186  T
Q  313 ccaaaaccactcagtcatgatgccggaatatacaaaaagcaaaatgccagaataagaatacccctgcatcaca 385  Q
    |||||||||||  |||||||||||| ||||||||| |||||||||| ||| | ||| ||||||||||||||||    
T  424187 ccaaaaccactatgtcatgatgccgaaatatacaacaagcaaaatgtcagcagaagtatacccctgcatcaca 424259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 120 - 357
Target Start/End: Original strand, 25633575 - 25633811
Alignment:
Q  120 ggatctagatatttcatattagtgtggcaaaatttt-aaagaaactataatacaaattatactaaaaataatatataacannnnnnnacgacaaatatta 218  Q
    ||||||||| |||  |||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||       ||| |||||||||    
T  25633575 ggatctagacattgtatattagtgtggcaaattttttaaagaaactataatacaa-ttatactaaaaataatatataacatttttttacggcaaatatta 25633673  T
Q  219 ttcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaatggcagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaaaa 318  Q
    |||||||| || |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25633674 ttcatcgttgagagggtgtaagacacacc-acaactcgcggaaaaaacggcagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaaaa 25633772  T
Q  319 ccactcagtcatgatgccggaatatacaaaaagcaaaat 357  Q
    ||| ||  ||||||||| ||||||||||| |||||||||    
T  25633773 ccattcgatcatgatgctggaatatacaacaagcaaaat 25633811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 210 - 357
Target Start/End: Original strand, 18108418 - 18108565
Alignment:
Q  210 caaatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaatggcagaaaatacaaaagtgaccgtatataggcggcacacttaa 309  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  18108418 caaatattattcatcgtcgagagggtgtaagacacgcccacaactcgcggaaaaaatggtagaaaataaaaaagtgaccgtatataggcggcacacttaa 18108517  T
Q  310 acaccaaaaccactcagtcatgatgccggaatatacaaaaagcaaaat 357  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  18108518 acaccaaaaccactcggtcatgatgccggaatatacaacaagcaaaat 18108565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 277 - 389
Target Start/End: Complemental strand, 17077007 - 17076895
Alignment:
Q  277 acaaaagtgaccgtatataggcggcacacttaaacaccaaaaccactcagtcatgatgccggaatatacaaaaagcaaaatgccagaataagaatacccc 376  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| |||||||||||||  | ||| |||||||    
T  17077007 acaaaagtgaccgtatataggcggcacacataaacaccaaaaccactcgatcatgatgccggaatatacaacaagcaaaatgccaacagaagtatacccc 17076908  T
Q  377 tgcatcacaaccg 389  Q
    | |||||||||||    
T  17076907 tacatcacaaccg 17076895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 36387103 - 36387048
Alignment:
Q  209 acaaatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaa 264  Q
    ||||||||||||||| | | | |||||||||||||| ||||||||||||| |||||    
T  36387103 acaaatattattcattgacaaaagggtgtaagacacacccacaactcgcgaaaaaa 36387048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 18108361 - 18108399
Alignment:
Q  112 tcaggggcggatctagatatttcatattagtgtggcaaa 150  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  18108361 tcaggggcggatctagacattttatattagtgtggcaaa 18108399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 17077039 - 17077002
Alignment:
Q  114 aggggcggatctagatatttcatattagtgtggcaaaa 151  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  17077039 aggggcggatctagacatttcatattagtgtgacaaaa 17077002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 113 - 389
Target Start/End: Original strand, 11462730 - 11463006
Alignment:
Q  113 caggggcggatctagatatttcatattagtgtggcaaaatttt-aaagaaactataatacaaattatactaaaaataatatataacannnnnnnacgaca 211  Q
    |||||||| ||||||| ||||||||||||||||||||| |||| ||||||||||||||| || |||||| |||||||||||||||||       |||| |    
T  11462730 caggggcgaatctagacatttcatattagtgtggcaaattttttaaagaaactataatagaagttatacaaaaaataatatataacatttttt-acgaaa 11462828  T
Q  212 aatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaatggcagaaaatacaaaagtgaccgtatataggcggcacacttaaac 311  Q
    ||||||||||| |||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  11462829 aatattattcaccgtcgagagggtgtaagacacgcccacaactcgaggaaaagacggcagaaaatacaaaagtgaccgtatataggcggcacacttaaac 11462928  T
Q  312 accaaaaccactcagtcatgatgccggaatatacaaaaagcaaaatgccagaataagaatacccctgcatcacaaccg 389  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||    
T  11462929 accaaaaccactcgatcatgatgccggaatatacaacaagcaaaatgccagcagaagtatacccctgcatcacaaccg 11463006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 113 - 386
Target Start/End: Complemental strand, 28536081 - 28535809
Alignment:
Q  113 caggggcggatctagatatttcatattagtgtggcaaaatttt-aaagaaactataatacaaattatactaaaaataatatataacannnnnnnacgaca 211  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||| |||||||||||       ||  ||    
T  28536081 caggggcagatctaga-atttcatattagtgtggcaaattttttaaagaaactataatacaa-ttatactaaaaagaatatataacaattttttaccgca 28535984  T
Q  212 aatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaatggcagaaaatacaaaagtgaccgtatataggcggcacacttaaac 311  Q
    |||||||||||||||| | |||||||||||| | |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28535983 aatattattcatcgtcaagagggtgtaagacgcacccacaactcgcagaaaaaacggcagaaaatacaaaagtgaccgtatataggcggcacacttaaac 28535884  T
Q  312 accaaaaccactcagtcatgatgccggaatatacaaaaagcaaaatgccagaataagaatacccctgcatcacaa 386  Q
    ||||||||||||| |||||||||||| ||||||||| |||||||||||||  | ||| ||| |||| ||||||||    
T  28535883 accaaaaccactcggtcatgatgccgaaatatacaacaagcaaaatgccaacagaagtataaccctacatcacaa 28535809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 45486394 - 45486311
Alignment:
Q  113 caggggcggatctagatatttcatattagtgtggcaaaa-ttttaaagaaactataatacaaattatactaaaaataatatataa 196  Q
    |||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  45486394 caggggcggatctagacattgcatattagtgtggcaaaatttttaaagaaactataata-aaattatactaaaaataatatataa 45486311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 347
Target Start/End: Complemental strand, 31550138 - 31550002
Alignment:
Q  212 aatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaa-tggcagaaaatacaaaagtgaccgtatataggcggcacacttaaa 310  Q
    |||||||||||||| ||| ||||| |||||||| |||||| |||||||||||||   ||||||| |||| | | | ||||||||||||||||| |  |||    
T  31550138 aatattattcatcgacgagagggtttaagacacacccacagctcgcggaaaaaaccagcagaaattacagaggaggccgtatataggcggcactccaaaa 31550039  T
Q  311 caccaaaaccactcagtcatgatgccggaatatacaa 347  Q
    |||||| |  |||||| ||||| ||||| ||||||||    
T  31550038 caccaagaaaactcagacatgaagccggcatatacaa 31550002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 2148338 - 2148388
Alignment:
Q  148 aaaattttaaagaaactataatacaaattatactaaaaataatatataaca 198  Q
    ||||||| |||||||||||||| ||||||||||||||||||| | ||||||    
T  2148338 aaaatttcaaagaaactataatgcaaattatactaaaaataagaaataaca 2148388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 113 - 362
Target Start/End: Complemental strand, 16693648 - 16693399
Alignment:
Q  113 caggggcggatctagatatttcatattagtgtggcaaaatttt-aaagaaactataatacaaattatactaaaaataatatataacannnnnnnacgaca 211  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||       ||| ||    
T  16693648 caggggcggatctagacatttcatattagtgtggcaaaatttttaaagaaactataatacaa-ttatactaaaaataatatataacatttttttacggca 16693550  T
Q  212 aatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaatggcagaaaatacaaaagtgaccgtatataggcggcacacttaaac 311  Q
    ||||||||||||| |||| |||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||     
T  16693549 aatattattcatcttcgagagggtgtaagacgcacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgtatataggtggcacacttaaaa 16693450  T
Q  312 accaaaaccactcagtcatgatgccggaatatacaaaaagcaaaatgccag 362  Q
     |||||||||||| |||||||||||||||||||||| | ||||||||||||    
T  16693449 cccaaaaccactcggtcatgatgccggaatatacaacacgcaaaatgccag 16693399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 210 - 389
Target Start/End: Original strand, 10773908 - 10774085
Alignment:
Q  210 caaatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaatggcagaaaatacaaaagtgaccgtatataggcggcacacttaa 309  Q
    |||||||||||||| | ||| |||||||||||||| ||||| ||| ||| |||||   ||||||| |||||||| | ||||||||||| || |||| |||    
T  10773908 caaatattattcatggacgagagggtgtaagacacacccactacttgcg-aaaaaccagcagaaa-tacaaaaggggccgtatataggaggtacacctaa 10774005  T
Q  310 acaccaaaaccactcagtcatgatgccggaatatacaaaaagcaaaatgccagaataagaatacccctgcatcacaaccg 389  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||||||| | | ||| ||||||||||||||||||||    
T  10774006 acaccaaaaccactcagtcatgatgccggaatatacaacaagtgaaatgccggcaaaagcatacccctgcatcacaaccg 10774085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 18816825 - 18816909
Alignment:
Q  112 tcaggggcggatctagatatttcatattagtgtggcaaaa-ttttaaagaaactataatacaaattatactaaaaataatatataa 196  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  18816825 tcaggggcggatctagacattgcatattagtgtggcaaaatttttaaagaaactataata-aaattatactaaaaataatatataa 18816909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 4140353 - 4140309
Alignment:
Q  8 gacatcatcaattcatacttggggaatggaagacaagacaaatga 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  4140353 gacatcatcaattcatacttgaggaatggaagacaagacaaatga 4140309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 5013726 - 5013769
Alignment:
Q  111 atcaggggcggatctagatatttcatattagtgtggcaaaattt 154  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  5013726 atcagggacggatctagacatttcatattagtgtggcaaaattt 5013769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 595812 - 595756
Alignment:
Q  112 tcaggggcggatctagatatttcatattagtgtggcaaaatttt-aaagaaactata 167  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||| ||| ||||||||    
T  595812 tcaggggtggatctagacatttgatattagtgtggcaaaattttcaaacaaactata 595756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 14902652 - 14902608
Alignment:
Q  217 tattcatcgtcgatagggtgtaagacacgcccacaactcgcggaa 261  Q
    ||||||||| ||| |||||||||||||| ||| ||||||||||||    
T  14902652 tattcatcgacgagagggtgtaagacacacccgcaactcgcggaa 14902608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 244
Target Start/End: Complemental strand, 38663405 - 38663274
Alignment:
Q  113 caggggcggatctagatatttcatattagtgtggcaaaa-ttttaaagaaactataatacaaattatactaaaaataatatataacannnnnnnacgaca 211  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||       ||| ||    
T  38663405 caggggcggatctagacattgcatattagtgtggcaaaatttttaaagaaactataatac-aattatactaaaaataatatataacatttttttacggca 38663307  T
Q  212 aatattattcatcgtcgatagggtgtaagacac 244  Q
    |||||||||||||||||| ||||||||||||||    
T  38663306 aatattattcatcgtcgagagggtgtaagacac 38663274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 39781200 - 39781114
Alignment:
Q  110 gatcaggggcggatctagatatttcatattagtgtggcaaa-attttaaagaaactataatacaaattatactaaaaataatatataa 196  Q
    ||||||||||||||||||| ||| |||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  39781200 gatcaggggcggatctagacattgcatattagtgtggcaaattttttaaagaaactataatac-aattatactaaaaataatatataa 39781114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 43266133 - 43266050
Alignment:
Q  113 caggggcggatctagatatttcatattagtgtggcaaa-attttaaagaaactataatacaaattatactaaaaataatatataa 196  Q
    |||||||||||||||| ||| |||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  43266133 caggggcggatctagacattgcatattagtgtggcaaattttttaaagaaactataatac-aattatactaaaaataatatataa 43266050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 42896847 - 42896904
Alignment:
Q  111 atcaggggcggatctagatatttcatattagtgtggcaaaa-ttttaaagaaactata 167  Q
    |||||||||||||||||| |||| ||||| ||||||||||| ||||||| ||||||||    
T  42896847 atcaggggcggatctagacatttgatattggtgtggcaaaacttttaaaaaaactata 42896904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 46437822 - 46437784
Alignment:
Q  116 gggcggatctagatatttcatattagtgtggcaaaattt 154  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  46437822 gggcggatctagacattttatattagtgtggcaaaattt 46437784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 12931634 - 12931542
Alignment:
Q  217 tattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaaaaatggcagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaa 316  Q
    ||||||||| ||| |||||||||||||| ||| |||||||||||         ||||| |||||||| ||||||||||| |||| |||| ||||| ||||    
T  12931634 tattcatcgacgagagggtgtaagacacacccgcaactcgcgga---------agaaagtacaaaagggaccgtatataagcggtacacctaaaccccaa 12931544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 8256525 - 8256597
Alignment:
Q  115 ggggcggatctagatatttcatattagtgtggc-aaaattttaaagaaactataatacaaattatactaaaaa 186  Q
    ||||| |||| ||| |||| | ||||||||||| ||||||||||||||| | ||||| |||||||| ||||||    
T  8256525 ggggcagatcgagacatttgagattagtgtggctaaaattttaaagaaattttaatataaattatattaaaaa 8256597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 46357785 - 46357837
Alignment:
Q  116 gggcggatctagatatttcatattagtgtggcaaaa-ttttaaagaaactata 167  Q
    ||||||||||||| |||| ||||| ||||||||||| ||| ||||||||||||    
T  46357785 gggcggatctagacatttgatattggtgtggcaaaactttcaaagaaactata 46357837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 8904463 - 8904393
Alignment:
Q  117 ggcggatctagatatttcatattagtgtggcaaaatttt-aaagaaactataatacaaattatactaaaaa 186  Q
    |||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||    
T  8904463 ggcggatctagacatttcatattagtgtggcaaattttttaaagaaactataatagaaattatactaaaaa 8904393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 33517983 - 33518024
Alignment:
Q  148 aaaattttaaagaaactataatacaaattatactaaaaataa 189  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  33517983 aaaattttaaagaaacaataatacaaattatattaaaaataa 33518024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 35390412 - 35390481
Alignment:
Q  130 atttcatattagtgtggc-aaaattttaaagaaactataatacaaattatactaaaaataatatataaca 198  Q
    |||| ||||||||||||| ||||||| ||||||| ||| ||  |||||||||||||||||||| ||||||    
T  35390412 atttgatattagtgtggctaaaatttcaaagaaattatgatgtaaattatactaaaaataataaataaca 35390481  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 155
Target Start/End: Original strand, 45065888 - 45065923
Alignment:
Q  120 ggatctagatatttcatattagtgtggcaaaatttt 155  Q
    ||||||||| ||||||||||||||||||||||||||    
T  45065888 ggatctagacatttcatattagtgtggcaaaatttt 45065923  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 52849880 - 52849839
Alignment:
Q  148 aaaattttaaagaaactataatacaaattatactaaaaataa 189  Q
    |||||||||||||||| |||||||||| |||| |||||||||    
T  52849880 aaaattttaaagaaacaataatacaaactatattaaaaataa 52849839  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 345
Target Start/End: Original strand, 41793301 - 41793436
Alignment:
Q  210 caaatattattcatcgtcgatagggtgtaagacacgcccacaactcgcggaaa-aaatggcagaaaatacaaaagtgaccgtatataggcggcacactta 308  Q
    |||||||||||||||| ||| |||||||||||||| |||| |||||||||||| ||  | ||| |||||||| |||| ||| || ||||||||||||  |    
T  41793301 caaatattattcatcgacgagagggtgtaagacactcccaaaactcgcggaaacaaccgacag-aaatacaacagtggccgaatttaggcggcacaccaa 41793399  T
Q  309 aacaccaaaaccactcagtcatgatgccggaatatac 345  Q
    ||| || |||||||||   ||||||||||| ||||||    
T  41793400 aactcccaaaccactcgaacatgatgccgggatatac 41793436  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 16915978 - 16916016
Alignment:
Q  116 gggcggatctagatatttcatattagtgtggcaaaattt 154  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  16915978 gggcggatttagacatttcatattagtgtggcaaaattt 16916016  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 16639349 - 16639308
Alignment:
Q  148 aaaattttaaagaaactataatacaaattatactaaaaataa 189  Q
    |||||||||||||||| |||||||||| |||| |||||||||    
T  16639349 aaaattttaaagaaacaataatacaaactatattaaaaataa 16639308  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 21610180 - 21610136
Alignment:
Q  217 tattcatcgtcgatagggtgtaagacacgcccacaactcgcggaa 261  Q
    ||||||||| ||| |||||||||||||| ||| ||||||||||||    
T  21610180 tattcatcgacgagagggtgtaagacacacccgcaactcgcggaa 21610136  T

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Target: scaffold0571 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 161 - 120
Alignment:
Q  113 caggggcggatctagatatttcatattagtgtggcaaaattt 154  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  161 caggggtggatctagacatttcatattagtgtggcaaaattt 120  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 48539 - 48495
Alignment:
Q  217 tattcatcgtcgatagggtgtaagacacgcccacaactcgcggaa 261  Q
    ||||||||| ||| |||||||||||||| ||| ||||||||||||    
T  48539 tattcatcgacgagagggtgtaagacacacccgcaactcgcggaa 48495  T

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