View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6192_high_5 (Length: 379)
Name: NF6192_high_5
Description: NF6192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6192_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 23)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 23868953 - 23868733
Alignment:
| Q |
3 |
ttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattctt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868953 |
ttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattctt |
23868854 |
T |
|
| Q |
103 |
gagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaa |
202 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
23868853 |
gagcaagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaa |
23868754 |
T |
|
| Q |
203 |
tatgtagatcttgtatgtttc |
223 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
23868753 |
gatgtagatcttgtatgtttc |
23868733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23402297 - 23402071
Alignment:
| Q |
1 |
gcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23402297 |
gcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
23402198 |
T |
|
| Q |
101 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
23402197 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttg |
23402098 |
T |
|
| Q |
201 |
aatatgtagatcttgtatgtttctaca |
227 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
23402097 |
aagatgtagatcttgtatgtttctaca |
23402071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23408595 - 23408821
Alignment:
| Q |
1 |
gcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408595 |
gcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
23408694 |
T |
|
| Q |
101 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23408695 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagataccaatgtctgggtgaacttgtttcagaactttg |
23408794 |
T |
|
| Q |
201 |
aatatgtagatcttgtatgtttctaca |
227 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
23408795 |
aagatgtagatcttgtatgtttctaca |
23408821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23415764 - 23415986
Alignment:
| Q |
1 |
gcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415764 |
gcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
23415863 |
T |
|
| Q |
101 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
23415864 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttg |
23415963 |
T |
|
| Q |
201 |
aatatgtagatcttgtatgtttc |
223 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
23415964 |
aagatgtagatcttgtatgtttc |
23415986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23453427 - 23453653
Alignment:
| Q |
1 |
gcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453427 |
gcttggccaattcaccaggaagaacaagactgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
23453526 |
T |
|
| Q |
101 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
23453527 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacatgattcagaactttg |
23453626 |
T |
|
| Q |
201 |
aatatgtagatcttgtatgtttctaca |
227 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
23453627 |
aagatgtagatcttgtatgtttctaca |
23453653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24307446 - 24307224
Alignment:
| Q |
1 |
gcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307446 |
gcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
24307347 |
T |
|
| Q |
101 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttg |
200 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
24307346 |
ttgagctagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttg |
24307247 |
T |
|
| Q |
201 |
aatatgtagatcttgtatgtttc |
223 |
Q |
| |
|
|| || ||||||||||||||||| |
|
|
| T |
24307246 |
aagatatagatcttgtatgtttc |
24307224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23886050 - 23885828
Alignment:
| Q |
1 |
gcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23886050 |
gcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
23885951 |
T |
|
| Q |
101 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
23885950 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttg |
23885851 |
T |
|
| Q |
201 |
aatatgtagatcttgtatgtttc |
223 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
23885850 |
aagatgtagatcttgtatgtttc |
23885828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26832958 - 26832736
Alignment:
| Q |
1 |
gcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
100 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832958 |
gcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
26832859 |
T |
|
| Q |
101 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttg |
200 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
26832858 |
ttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttg |
26832759 |
T |
|
| Q |
201 |
aatatgtagatcttgtatgtttc |
223 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
26832758 |
aagatgtagatcttgtatgtttc |
26832736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26434247 - 26434025
Alignment:
| Q |
1 |
gcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
100 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434247 |
gcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
26434148 |
T |
|
| Q |
101 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttg |
200 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| || ||| |
|
|
| T |
26434147 |
ttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttg |
26434048 |
T |
|
| Q |
201 |
aatatgtagatcttgtatgtttc |
223 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
26434047 |
aagatgtagatcttgtatgtttc |
26434025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26436027 - 26435805
Alignment:
| Q |
1 |
gcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
100 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26436027 |
gcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattc |
26435928 |
T |
|
| Q |
101 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttg |
200 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
26435927 |
ttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttg |
26435828 |
T |
|
| Q |
201 |
aatatgtagatcttgtatgtttc |
223 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
26435827 |
aagatgtagatcttgtatgtttc |
26435805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34662096 - 34662318
Alignment:
| Q |
1 |
gcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattc |
100 |
Q |
| |
|
|||| |||||||| |||||||||||||| || || ||||||||||||||||| ||||| || || ||||||||||| || | ||||||||||| ||||| |
|
|
| T |
34662096 |
gcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattc |
34662195 |
T |
|
| Q |
101 |
ttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttg |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| || ||| |
|
|
| T |
34662196 |
ttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttg |
34662295 |
T |
|
| Q |
201 |
aatatgtagatcttgtatgtttc |
223 |
Q |
| |
|
|| |||||||||||||| ||||| |
|
|
| T |
34662296 |
aagatgtagatcttgtaggtttc |
34662318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 24307186 - 24307076
Alignment:
| Q |
261 |
gcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtt |
360 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307186 |
gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt |
24307087 |
T |
|
| Q |
361 |
tcttctctgct |
371 |
Q |
| |
|
||||||||||| |
|
|
| T |
24307086 |
tcttctctgct |
24307076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 258 - 371
Target Start/End: Complemental strand, 26832701 - 26832588
Alignment:
| Q |
258 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
357 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26832701 |
ccggcggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26832602 |
T |
|
| Q |
358 |
gtttcttctctgct |
371 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26832601 |
gtttcttctctgct |
26832588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 267 - 367
Target Start/End: Complemental strand, 23402031 - 23401931
Alignment:
| Q |
267 |
gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23402031 |
gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct |
23401932 |
T |
|
| Q |
367 |
c |
367 |
Q |
| |
|
| |
|
|
| T |
23401931 |
c |
23401931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 23451788 - 23451920
Alignment:
| Q |
2 |
cttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattct |
101 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
23451788 |
cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct |
23451887 |
T |
|
| Q |
102 |
tgagcaagcttctcgaagatatcattgatgaaa |
134 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||| |
|
|
| T |
23451888 |
tgagcgagcttctcaaagatatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 258 - 371
Target Start/End: Complemental strand, 26433990 - 26433877
Alignment:
| Q |
258 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
357 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26433990 |
ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26433891 |
T |
|
| Q |
358 |
gtttcttctctgct |
371 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26433890 |
gtttcttctctgct |
26433877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 258 - 371
Target Start/End: Complemental strand, 26435770 - 26435657
Alignment:
| Q |
258 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
357 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26435770 |
ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26435671 |
T |
|
| Q |
358 |
gtttcttctctgct |
371 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26435670 |
gtttcttctctgct |
26435657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 267 - 367
Target Start/End: Original strand, 23408861 - 23408961
Alignment:
| Q |
267 |
gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23408861 |
gaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct |
23408960 |
T |
|
| Q |
367 |
c |
367 |
Q |
| |
|
| |
|
|
| T |
23408961 |
c |
23408961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 258 - 367
Target Start/End: Original strand, 23416018 - 23416127
Alignment:
| Q |
258 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || | |
|
|
| T |
23416018 |
ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctg |
23416117 |
T |
|
| Q |
358 |
gtttcttctc |
367 |
Q |
| |
|
|||||||||| |
|
|
| T |
23416118 |
gtttcttctc |
23416127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 258 - 367
Target Start/End: Complemental strand, 23868698 - 23868589
Alignment:
| Q |
258 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
357 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868698 |
ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgg |
23868599 |
T |
|
| Q |
358 |
gtttcttctc |
367 |
Q |
| |
|
|||||||||| |
|
|
| T |
23868598 |
gtttcttctc |
23868589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 258 - 371
Target Start/End: Complemental strand, 23885793 - 23885680
Alignment:
| Q |
258 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
357 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
23885793 |
ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctg |
23885694 |
T |
|
| Q |
358 |
gtttcttctctgct |
371 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
23885693 |
gtttcttctctgct |
23885680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 34662359 - 34662463
Alignment:
| Q |
264 |
gctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttct |
363 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
34662359 |
gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttct |
34662458 |
T |
|
| Q |
364 |
tctct |
368 |
Q |
| |
|
||||| |
|
|
| T |
34662459 |
tctct |
34662463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 270 - 367
Target Start/End: Original strand, 23453696 - 23453793
Alignment:
| Q |
270 |
ccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttctc |
367 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
23453696 |
ccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttcttctc |
23453793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 41670613 - 41670401
Alignment:
| Q |
11 |
ttcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagc |
110 |
Q |
| |
|
|||||| || |||||||| | || |||||||| || |||| ||||||||||| |||||||||||||| | ||||||||||| ||||| ||||| ||| |
|
|
| T |
41670613 |
ttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttcttgttgtacctcgcaagtctggaagattcctgagcgagc |
41670514 |
T |
|
| Q |
111 |
ttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtaga |
210 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| || ||||| || || || || ||||| ||||||| |
|
|
| T |
41670513 |
ttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagatgtaga |
41670414 |
T |
|
| Q |
211 |
tcttgtatgtttc |
223 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
41670413 |
tcttgtaggtttc |
41670401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 40795957 - 40795767
Alignment:
| Q |
36 |
gcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaac |
135 |
Q |
| |
|
||||||||||| || | || ||||| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
40795957 |
gcagtctgaatctcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaac |
40795858 |
T |
|
| Q |
136 |
tgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctac |
226 |
Q |
| |
|
||||||| || ||||| || ||||| ||||| |||||||| || ||||| || || || || ||||| |||||||||||||| |||||||| |
|
|
| T |
40795857 |
tgttcatgatccccatagccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac |
40795767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 33216666 - 33216594
Alignment:
| Q |
3 |
ttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgt |
75 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
33216666 |
ttggccaattcaccaagaagaacaagtctgacagcagtttgaattttccttgaagtgattgttggcttcttgt |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 29391621 - 29391467
Alignment:
| Q |
69 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatac |
168 |
Q |
| |
|
||||||||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| |||||| || |||| |
|
|
| T |
29391621 |
ttcttgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatac |
29391522 |
T |
|
| Q |
169 |
caatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
223 |
Q |
| |
|
| || || || ||||| ||||| || || ||||| ||||| ||||| || ||||| |
|
|
| T |
29391521 |
ctatatcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc |
29391467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
| Q |
95 |
tgattcttgagcaagcttctcgaagatatcattgatg |
131 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33216594 |
tgattcttgagcaagcttcacgaagatatcattgatg |
33216558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 47317503 - 47317431
Alignment:
| Q |
3 |
ttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgt |
75 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47317503 |
ttggccaattcaccaggaagaataagtctgacaacagtttgaatttcccttgaagtgattgttggcttcttgt |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 40180330 - 40180547
Alignment:
| Q |
6 |
gccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgag |
105 |
Q |
| |
|
|||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || ||||||||||| || | ||| | | || ||||| |||| |
|
|
| T |
40180330 |
gccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctagccaaacgagacgattcctgag |
40180429 |
T |
|
| Q |
106 |
caagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatat |
205 |
Q |
| |
|
| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || || || ||||| |||||||| || ||||| || |
|
|
| T |
40180430 |
cgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagat |
40180529 |
T |
|
| Q |
206 |
gtagatcttgtatgtttc |
223 |
Q |
| |
|
||| |||||||| ||||| |
|
|
| T |
40180530 |
gtatatcttgtaggtttc |
40180547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
| Q |
95 |
tgattcttgagcaagcttctcgaagatatcattgatg |
131 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47317431 |
tgattcttgagcaagcttcacgaagatatcattgatg |
47317395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
| Q |
98 |
ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtact |
197 |
Q |
| |
|
||||||||| || |||| |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| || || |
|
|
| T |
29684826 |
ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc |
29684727 |
T |
|
| Q |
198 |
ttgaatatgtagatcttgtatgtttc |
223 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
29684726 |
ttgaatatatatatcttgtaggtttc |
29684701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 14715472 - 14715433
Alignment:
| Q |
1 |
gcttggccaattcaccaggaagaacaagtctgactgcagt |
40 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
14715472 |
gcttggccaattctccaggaagaacaagtctcactgcagt |
14715433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 14715420 - 14715372
Alignment:
| Q |
319 |
gagctttctcggcgacggtggacttcttctcctctgcgggtttcttctc |
367 |
Q |
| |
|
|||||||||| |||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
14715420 |
gagctttctcctcgacagtgtatttcttctcctctgcgggtttcttctc |
14715372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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