View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6192_high_7 (Length: 375)

Name: NF6192_high_7
Description: NF6192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6192_high_7
NF6192_high_7
[»] chr1 (7 HSPs)
chr1 (11-359)||(8555248-8555596)
chr1 (26-106)||(8559800-8559880)
chr1 (304-356)||(8558889-8558941)
chr1 (319-356)||(8554428-8554465)
chr1 (235-282)||(8462171-8462218)
chr1 (244-285)||(8809718-8809759)
chr1 (233-285)||(25161350-25161402)
[»] chr3 (4 HSPs)
chr3 (244-285)||(42664725-42664766)
chr3 (244-285)||(31187148-31187189)
chr3 (244-285)||(34029369-34029410)
chr3 (234-294)||(50934542-50934602)
[»] chr7 (4 HSPs)
chr7 (233-281)||(23178464-23178512)
chr7 (244-292)||(40856483-40856531)
chr7 (235-292)||(48072430-48072487)
chr7 (233-285)||(35341577-35341629)
[»] chr4 (6 HSPs)
chr4 (233-285)||(47943200-47943252)
chr4 (233-285)||(52012819-52012871)
chr4 (234-292)||(21260836-21260894)
chr4 (235-285)||(49999666-49999716)
chr4 (242-282)||(9799444-9799484)
chr4 (233-285)||(35869649-35869701)
[»] chr8 (5 HSPs)
chr8 (234-285)||(4708385-4708436)
chr8 (249-285)||(1514860-1514896)
chr8 (234-292)||(41179634-41179692)
chr8 (253-285)||(11254106-11254138)
chr8 (249-297)||(32825901-32825949)
[»] chr5 (8 HSPs)
chr5 (244-285)||(13086805-13086846)
chr5 (244-285)||(29990014-29990055)
chr5 (233-285)||(33858616-33858668)
chr5 (234-285)||(39570121-39570172)
chr5 (253-292)||(42148207-42148246)
chr5 (244-285)||(13015433-13015474)
chr5 (244-285)||(37881193-37881234)
chr5 (233-285)||(11607612-11607664)
[»] scaffold0519 (1 HSPs)
scaffold0519 (253-285)||(11255-11287)
[»] chr2 (2 HSPs)
chr2 (253-285)||(21604020-21604052)
chr2 (252-292)||(34903962-34904002)


Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 8555248 - 8555596
Alignment:
Q  11 ttatactgtactaataagttgttgactgcagattgatgaagccgctgacacgtacgcttttatggctaagatgttagaggctcattggactgagtagagc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  8555248 ttatactgtactaataagttgttgactgcagattgatgaagccgctgacacgtacacttttatggctaagatgttagaggctcattggattgagtagagc 8555347  T
Q  111 tgtcaaaagtaatgtgcgagatttcatttcttcattttcctctcaatcacaattgataacaaagttattggaaatagtagttactagacttattagggat 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8555348 tgtcaaaagtaatgtgcgagatttcatttcttccttttcctctcaatcacaattgataacaaagttattggaaatagtagttactagacttattagggat 8555447  T
Q  211 agcagatgtgtaccattaaggtaccaattaaaatgtgacacataccaatgttattttataaatgttttatttgatgtattttataaatgctttataaaac 310  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8555448 agcagatgtgtaccattaaggtaccaattaaaatgtgtcacataccaatgttattttataaatgttttatttgatgtattttataaatgctttataaaac 8555547  T
Q  311 aggtttgtttcattttctattcaatttgaagttgcatttgtattgtact 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8555548 aggtttgtttcattttctattcaatttgaagttgcatttgtattgtact 8555596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 8559800 - 8559880
Alignment:
Q  26 aagttgttgactgcagattgatgaagccgctgacacgtacgcttttatggctaagatgttagaggctcattggactgagta 106  Q
    ||||||||||||||||||||||||||||||||||  ||| | |||||||||||||||||||||||||| ||||| ||||||    
T  8559800 aagttgttgactgcagattgatgaagccgctgaccggtatggttttatggctaagatgttagaggctcgttggattgagta 8559880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 8558889 - 8558941
Alignment:
Q  304 ataaaacaggtttgtttcattttctattcaatttgaagttgcatttgtattgt 356  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  8558889 ataaatcaggtttgtttcattttctattcaattggaagttgcatttgtattgt 8558941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 356
Target Start/End: Original strand, 8554428 - 8554465
Alignment:
Q  319 ttcattttctattcaatttgaagttgcatttgtattgt 356  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8554428 ttcattttctattcaattggaagttgcatttgtattgt 8554465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 8462171 - 8462218
Alignment:
Q  235 caattaaaatgtgacacataccaatgttattttataaatgttttattt 282  Q
    |||||| | |||| ||| ||||||||||||||||||||||||||||||    
T  8462171 caattatagtgtgccacctaccaatgttattttataaatgttttattt 8462218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 8809759 - 8809718
Alignment:
Q  244 tgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||| ||| ||||||||||| |||||||||||||||||||||    
T  8809759 tgtgccacgtaccaatgttactttataaatgttttatttgat 8809718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 25161350 - 25161402
Alignment:
Q  233 accaattaaaatgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||||||| | |||| ||| || |||||||| |||||||||||||||||||||    
T  25161350 accaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 42664725 - 42664766
Alignment:
Q  244 tgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  42664725 tgtgccacataccaatgttattttataaatgttttatttgat 42664766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 31187189 - 31187148
Alignment:
Q  244 tgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  31187189 tgtgccacataccaatgttactttataaatgttttatttgat 31187148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 34029410 - 34029369
Alignment:
Q  244 tgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  34029410 tgtgccacatactaatgttactttataaatgttttatttgat 34029369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 50934542 - 50934602
Alignment:
Q  234 ccaattaaaatgtgacacataccaatgttattttataaatgttttatttgatgtattttat 294  Q
    ||||||| | |||| ||| ||||||||||| ||||||||||  ||||||||| ||||||||    
T  50934542 ccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatatattttat 50934602  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 23178464 - 23178512
Alignment:
Q  233 accaattaaaatgtgacacataccaatgttattttataaatgttttatt 281  Q
    |||| |||||||||| |||||| ||||||||||||||||||||||||||    
T  23178464 accacttaaaatgtgtcacatatcaatgttattttataaatgttttatt 23178512  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 40856483 - 40856531
Alignment:
Q  244 tgtgacacataccaatgttattttataaatgttttatttgatgtatttt 292  Q
    |||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  40856483 tgtgtcacctaccaatgttattttatagatgttttatttgatgtatttt 40856531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 48072430 - 48072487
Alignment:
Q  235 caattaaaatgtgacacataccaatgttattttataaatgttttatttgatgtatttt 292  Q
    |||||| | |||| |||||  |||||||||||||||||| ||||||||||||||||||    
T  48072430 caattagagtgtgccacatttcaatgttattttataaatattttatttgatgtatttt 48072487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 35341577 - 35341629
Alignment:
Q  233 accaattaaaatgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||||||| | |||| ||| ||||||||||| |||||||||||||||||||||    
T  35341577 accaattatagtgtgccacctaccaatgttactttataaatgttttatttgat 35341629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 47943200 - 47943252
Alignment:
Q  233 accaattaaaatgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||||| |||||||| ||||||||||| ||||||||||||| |||||||||||    
T  47943200 accaataaaaatgtgccacataccaatattattttataaatattttatttgat 47943252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 52012819 - 52012871
Alignment:
Q  233 accaattaaaatgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||||| ||| |||| ||||||||||||||| |||||||||||||||||||||    
T  52012819 accaataaaagtgtgccacataccaatgttactttataaatgttttatttgat 52012871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 21260836 - 21260894
Alignment:
Q  234 ccaattaaaatgtgacacataccaatgttattttataaatgttttatttgatgtatttt 292  Q
    ||||||| | |||| ||| ||||||||||| ||||||||||||||||||||| ||||||    
T  21260836 ccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatatttt 21260894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 49999716 - 49999666
Alignment:
Q  235 caattaaaatgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||||| | |||| |||||||||||||||||||||||||| ||||||||||    
T  49999716 caattagagtgtgtcacataccaatgttattttataaatgctttatttgat 49999666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 9799484 - 9799444
Alignment:
Q  242 aatgtgacacataccaatgttattttataaatgttttattt 282  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  9799484 aatgtgccacataccaatgttactttataaatgttttattt 9799444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 35869701 - 35869649
Alignment:
Q  233 accaattaaaatgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||||||| |||||| ||| ||||||||||| | |||||||||||||||||||    
T  35869701 accaattataatgtgccacctaccaatgttactatataaatgttttatttgat 35869649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 4708436 - 4708385
Alignment:
Q  234 ccaattaaaatgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    ||||||||| |||| ||| ||||||||||| |||||||||||||||||||||    
T  4708436 ccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgat 4708385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 1514860 - 1514896
Alignment:
Q  249 cacataccaatgttattttataaatgttttatttgat 285  Q
    ||||||||||||||| |||||||||||||||||||||    
T  1514860 cacataccaatgttactttataaatgttttatttgat 1514896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 41179692 - 41179634
Alignment:
Q  234 ccaattaaaatgtgacacataccaatgttattttataaatgttttatttgatgtatttt 292  Q
    ||||||||| |||| ||| |||| |||||| |||||||||||||||||| || ||||||    
T  41179692 ccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaatatatttt 41179634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 11254138 - 11254106
Alignment:
Q  253 taccaatgttattttataaatgttttatttgat 285  Q
    ||||||||||| |||||||||||||||||||||    
T  11254138 taccaatgttactttataaatgttttatttgat 11254106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 32825949 - 32825901
Alignment:
Q  249 cacataccaatgttattttataaatgttttatttgatgtattttataaa 297  Q
    |||||| |||||||||||||||  ||||||||||||| |||||| ||||    
T  32825949 cacatatcaatgttattttatatgtgttttatttgatatattttttaaa 32825901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 13086805 - 13086846
Alignment:
Q  244 tgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||| ||||||||||||||||||||||||| |||||||||||    
T  13086805 tgtgccacataccaatgttattttataaatattttatttgat 13086846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 29990014 - 29990055
Alignment:
Q  244 tgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  29990014 tgtgccacataccaatgttactttataaatgttttatttgat 29990055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 33858668 - 33858616
Alignment:
Q  233 accaattaaaatgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||||||| | |||| ||| ||||||||||| |||||||||||||||||||||    
T  33858668 accaattatagtgtgccacctaccaatgttactttataaatgttttatttgat 33858616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 39570172 - 39570121
Alignment:
Q  234 ccaattaaaatgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    ||||||| | |||| ||| ||||||||||| |||||||||||||||||||||    
T  39570172 ccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgat 39570121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 42148207 - 42148246
Alignment:
Q  253 taccaatgttattttataaatgttttatttgatgtatttt 292  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  42148207 taccaatgttactttataaatgttttatttgatatatttt 42148246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 13015433 - 13015474
Alignment:
Q  244 tgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||| ||||||||||||||| ||||||||| |||||||||||    
T  13015433 tgtgccacataccaatgttactttataaatattttatttgat 13015474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 37881193 - 37881234
Alignment:
Q  244 tgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||| ||||||||||||||| ||||||||| |||||||||||    
T  37881193 tgtgccacataccaatgttactttataaatattttatttgat 37881234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 11607664 - 11607612
Alignment:
Q  233 accaattaaaatgtgacacataccaatgttattttataaatgttttatttgat 285  Q
    |||||||| | |||| ||| ||||||| ||| |||||||||||||||||||||    
T  11607664 accaattatagtgtgccacctaccaatattactttataaatgttttatttgat 11607612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 11255 - 11287
Alignment:
Q  253 taccaatgttattttataaatgttttatttgat 285  Q
    ||||||||||| |||||||||||||||||||||    
T  11255 taccaatgttactttataaatgttttatttgat 11287  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 21604020 - 21604052
Alignment:
Q  253 taccaatgttattttataaatgttttatttgat 285  Q
    ||||||||||| |||||||||||||||||||||    
T  21604020 taccaatgttactttataaatgttttatttgat 21604052  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 34903962 - 34904002
Alignment:
Q  252 ataccaatgttattttataaatgttttatttgatgtatttt 292  Q
    |||| |||||||||||||||||| |||||||||| ||||||    
T  34903962 atactaatgttattttataaatgctttatttgatatatttt 34904002  T

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