View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6192_low_1 (Length: 624)
Name: NF6192_low_1
Description: NF6192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6192_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 234 - 606
Target Start/End: Complemental strand, 820649 - 820278
Alignment:
| Q |
234 |
caatgggataatatgtgatttctaaattttatttcaagctccttctcaattattttttgttcttcaattgcactgatggtgaatgtgattcatgtagtat |
333 |
Q |
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| T |
820649 |
caatgggataatatgtgatttctaaattttatttcaagctc-ttctcaattattttttgttcttcaattgcactgatggtgaatgtgattcatgtagtat |
820551 |
T |
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| Q |
334 |
tgaccagagcacgtgcacgtcctcatagtcgcaatttttcacatcttcgtacaaatcatataaccctgtgtctgcaacaaaaaggaattattgtgtgnnn |
433 |
Q |
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| T |
820550 |
tgaccagaggacgtgcacgtcttcatagtcgcaatttttcacatcttcgtacaaatcatataaccctgtgtctgcaacaaaaaggaattattgtgtgaaa |
820451 |
T |
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| Q |
434 |
nnnntgggcacgagtaagaagataataaaaaatgaattgtgtagaagatatatttttgtttttaagaaatcacattgaaataaatgtgaaggaggaaaat |
533 |
Q |
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| T |
820450 |
aaaatgggcatgagtaagaagataataaaaaatgaattgtgtggaagatatatttttgtttttatgaaatcacattgaaataaatgtgaaggaggaaaat |
820351 |
T |
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| Q |
534 |
ttatgtatgtgattgattgattcaaagtgctacaaactaaggatgtcaacgcagtaaatttcctcctaggaaa |
606 |
Q |
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| T |
820350 |
ttatgtatgtgattgattgattcaaagtgctacaaactaaggatgtcaacgcagtaaatttcctcctaggaaa |
820278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 820847 - 820773
Alignment:
| Q |
42 |
ttgagttggtttttagtttattttatatcagttttgatttgaacactcataataatgtatgtataactaactagt |
116 |
Q |
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| T |
820847 |
ttgagttgatttttagtttattttatatcagttttgatttgaacactcataataatgtatgtataactaactagt |
820773 |
T |
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