View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6192_low_10 (Length: 343)
Name: NF6192_low_10
Description: NF6192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6192_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 1155077 - 1154816
Alignment:
| Q |
18 |
tttttagattaacactccttttcttgattcttgtcgttttaagtggtgtttgttattatgtaatttataagctgaaattttgagataaaaactcatttac |
117 |
Q |
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| T |
1155077 |
tttttagataaaaactcctttacttgattctgttcggtttaagcgttgttcttgattatgtaattgataagctgaaattttgagataaaaactcatttac |
1154978 |
T |
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| Q |
118 |
ttgattctgattcggtttaagcgttgttcttgattatgtaactgataagctgaaattttagggtaaaaactcaattgataactga-ttaattgcatacat |
216 |
Q |
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| T |
1154977 |
ttgattctgattcggtttaagcgttgttcttgattatgtaactgataagctgaaattttagggtaaaaactcaattgataactgatttaattgcatacat |
1154878 |
T |
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| Q |
217 |
atgattgcatttatgaaaattgtttttaatcagttcggttacatattttttcatcaactagt |
278 |
Q |
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| T |
1154877 |
atgattgcatttatgaaaattgtttttaatcagttcggttacatattttttcatcaactagt |
1154816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 1155154 - 1154983
Alignment:
| Q |
18 |
tttttagattaacactccttttcttgattcttgtcgttttaagtggtgtttgttattatgtaatttataagctgaaattttgagataaaaactcatttac |
117 |
Q |
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| T |
1155154 |
ttttaagataaaaactcctttacttgattctgttcggtttaagcgttgttcttgattatgtaattaataagctgaattttttagataaaaactcctttac |
1155055 |
T |
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| Q |
118 |
ttgattctgattcggtttaagcgttgttcttgattatgtaactgataagctgaaattttagggtaaaaactca |
190 |
Q |
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| T |
1155054 |
ttgattctg-ttcggtttaagcgttgttcttgattatgtaattgataagctgaaattttgagataaaaactca |
1154983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 329
Target Start/End: Complemental strand, 1154793 - 1154765
Alignment:
| Q |
301 |
ctggaaaattaaatatgagaattgtatgt |
329 |
Q |
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| T |
1154793 |
ctggaaaattaaatatgagaattgtatgt |
1154765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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