View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6192_low_13 (Length: 318)

Name: NF6192_low_13
Description: NF6192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6192_low_13
NF6192_low_13
[»] chr3 (6 HSPs)
chr3 (75-269)||(52118779-52118977)
chr3 (75-239)||(26557106-26557274)
chr3 (211-261)||(28211264-28211314)
chr3 (28-71)||(26555656-26555699)
chr3 (28-67)||(52118475-52118514)
chr3 (68-107)||(39163818-39163857)
[»] chr1 (6 HSPs)
chr1 (75-269)||(22787820-22788019)
chr1 (145-269)||(9049847-9049972)
chr1 (68-140)||(6154344-6154416)
chr1 (211-269)||(1014536-1014594)
chr1 (17-71)||(22788280-22788337)
chr1 (28-59)||(18431540-18431571)
[»] chr5 (6 HSPs)
chr5 (68-140)||(424261-424333)
chr5 (211-269)||(25634015-25634073)
chr5 (266-308)||(17076751-17076793)
chr5 (225-259)||(9048063-9048097)
chr5 (112-147)||(18108582-18108617)
chr5 (71-107)||(18113296-18113332)
[»] chr7 (1 HSPs)
chr7 (211-269)||(39780709-39780767)
[»] chr6 (5 HSPs)
chr6 (211-269)||(24904204-24904262)
chr6 (28-71)||(16693149-16693192)
chr6 (68-114)||(14434623-14434669)
chr6 (68-144)||(20737759-20737835)
chr6 (28-59)||(5013987-5014018)
[»] chr8 (4 HSPs)
chr8 (17-71)||(28535329-28535386)
chr8 (269-308)||(11463101-11463140)
chr8 (68-107)||(37173581-37173620)
chr8 (68-107)||(37177872-37177911)
[»] chr2 (1 HSPs)
chr2 (28-59)||(16916273-16916304)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 75 - 269
Target Start/End: Original strand, 52118779 - 52118977
Alignment:
Q  75 tattgacatggtactacaatgaaaagaaacattgctg----ccacattctaattctcacgttatttgttcctttgataggcctaatctttaaattcagtt 170  Q
    ||||||||||||||| ||||||||||||| ||| ||     ||||||||||||||||| ||||||||||||||||||||| ||| |||| ||||||| ||    
T  52118779 tattgacatggtactgcaatgaaaagaaaaattacttactaccacattctaattctcatgttatttgttcctttgataggtctagtcttaaaattcaatt 52118878  T
Q  171 taggcctttgatgtgtgtggcctactctgccattgccgtttgaatttaagcaactttagggtgatgtgaactgtgatttcaacctgtatgtgaaagttt 269  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  52118879 taggcctttgatgtgtgtggtctactctgccattgctgtttgaatttaagctactttagggtgatgtgaactgtgatttcaacctgtatgtgcaagttt 52118977  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 26557106 - 26557274
Alignment:
Q  75 tattgacatggtactacaatgaaaagaaaca----ttgctgccacattctaattctcacgttatttgttcctttgataggcctaatctttaaattcagtt 170  Q
    ||||||||||||||| || |||||||||| |    || |||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||    
T  26557106 tattgacatggtactgcagtgaaaagaaaaattacttactgccacattctaattttcatgttatttgttcctttgataggcctaatcttaaaattcaatt 26557205  T
Q  171 taggcctttgatgtgtgtggcctactctgccattgccgtttgaatttaagcaactttagggtgatgtga 239  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  26557206 taggcctttgatgtgtgtggtctactctgccattgcagtttgaatttaagctactttagggtgatgtga 26557274  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 28211314 - 28211264
Alignment:
Q  211 tgaatttaagcaactttagggtgatgtgaactgtgatttcaacctgtatgt 261  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28211314 tgaatttaagcaactttagggtgatgtgaactatgatttcaacctgtatgt 28211264  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 26555656 - 26555699
Alignment:
Q  28 ttcttctcttctcacaaatcacaattcacaatatcctttcttct 71  Q
    |||||||||||||||||||||||||||||||| | |||||||||    
T  26555656 ttcttctcttctcacaaatcacaattcacaatcttctttcttct 26555699  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 52118475 - 52118514
Alignment:
Q  28 ttcttctcttctcacaaatcacaattcacaatatcctttc 67  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  52118475 ttcttctcttctcacaaatcacaattcacaatctcctttc 52118514  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 39163857 - 39163818
Alignment:
Q  68 ttctatgtattgacatggtactacaatgaaaagaaacatt 107  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  39163857 ttctatgtattgacaaggaactacaatgaaaagaaacatt 39163818  T

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Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 75 - 269
Target Start/End: Complemental strand, 22788019 - 22787820
Alignment:
Q  75 tattgacatggtactacaatgaaaagaaaca----ttgctgccacattctaattctcacgttatttgttcctttgataggcctaatctttaaattcagtt 170  Q
    ||||||||||||||| ||||||||||||| |    || |||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||| ||    
T  22788019 tattgacatggtactgcaatgaaaagaaaaattacttactgccacattctaattttcatgttatttgttccttttataggcctaatcttaaaattcaatt 22787920  T
Q  171 taggcctttgatgtgtgtggcctactctgccattgccgtttgaatttaagcaacttt-agggtgatgtgaactgtgatttcaacctgtatgtgaaagttt 269  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  22787919 taggcctttgatgtgtgtggtctactctgccattgccgtttgaatttaagctactttaaaggtgatgtgaactgtgatttcaacctgtatgtgcaagttt 22787820  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 145 - 269
Target Start/End: Complemental strand, 9049972 - 9049847
Alignment:
Q  145 gataggcctaatctttaaattcagtttaggcctttgatgtgtgtggcctactctgccattgccgtttgaatttaagcaactttagggtgatgtgaactgt 244  Q
    |||| |||||||||||||||||| ||||||||||||||||  |||||||||||||| |||     |||||||||||||||||||||||||||||||||||    
T  9049972 gataagcctaatctttaaattcaatttaggcctttgatgtcagtggcctactctgctattagtaattgaatttaagcaactttagggtgatgtgaactgt 9049873  T
Q  245 gatttc-aacctgtatgtgaaagttt 269  Q
    |||||| |||||||||||| ||||||    
T  9049872 gatttctaacctgtatgtgcaagttt 9049847  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 6154416 - 6154344
Alignment:
Q  68 ttctatgtattgacatggtactacaatgaaaagaaacattgctgccacattctaattctcacgttatttgttc 140  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6154416 ttctatgtattgacatggtactgcaatgaaaagaaacattactgccacattctaattctcacgttatttgttc 6154344  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 1014536 - 1014594
Alignment:
Q  211 tgaatttaagcaactttagggtgatgtgaactgtgatttcaacctgtatgtgaaagttt 269  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  1014536 tgaatttaagcaactttagggtgatgtgaactatgatttcaacctgtatgtgcaagttt 1014594  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 22788337 - 22788280
Alignment:
Q  17 tcacaatcggtttc---ttctcttctcacaaatcacaattcacaatatcctttcttct 71  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| | |||||||||    
T  22788337 tcacaatcggtttcttcttctcttctcacaaatcacaattcacaatcttctttcttct 22788280  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 18431571 - 18431540
Alignment:
Q  28 ttcttctcttctcacaaatcacaattcacaat 59  Q
    ||||||||||||||||||||||||||||||||    
T  18431571 ttcttctcttctcacaaatcacaattcacaat 18431540  T

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Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 424333 - 424261
Alignment:
Q  68 ttctatgtattgacatggtactacaatgaaaagaaacattgctgccacattctaattctcacgttatttgttc 140  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  424333 ttctatgtattgacatggtactgcaatgaaaagaaacattactgccacattctaattctcgcgttatctgttc 424261  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 25634073 - 25634015
Alignment:
Q  211 tgaatttaagcaactttagggtgatgtgaactgtgatttcaacctgtatgtgaaagttt 269  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||    
T  25634073 tgaatttaagcaactttagggtgatgtgaactatgatttcaacatgtatgtgcaagttt 25634015  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 17076751 - 17076793
Alignment:
Q  266 gtttggggaggggctttctgtcatctggtgcgagtttttgggt 308  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  17076751 gtttggggaggggctttctgtcatatggtgcgagtttttgggt 17076793  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 259
Target Start/End: Complemental strand, 9048097 - 9048063
Alignment:
Q  225 tttagggtgatgtgaactgtgatttcaacctgtat 259  Q
    |||||||||||||||||||||||||||||||||||    
T  9048097 tttagggtgatgtgaactgtgatttcaacctgtat 9048063  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 147
Target Start/End: Complemental strand, 18108617 - 18108582
Alignment:
Q  112 ccacattctaattctcacgttatttgttcctttgat 147  Q
    ||||||||||||||||||||||||||||||| ||||    
T  18108617 ccacattctaattctcacgttatttgttcctgtgat 18108582  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 18113332 - 18113296
Alignment:
Q  71 tatgtattgacatggtactacaatgaaaagaaacatt 107  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  18113332 tatgtattgacatggtactgcaatgaaaagatacatt 18113296  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 39780709 - 39780767
Alignment:
Q  211 tgaatttaagcaactttagggtgatgtgaactgtgatttcaacctgtatgtgaaagttt 269  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  39780709 tgaatttaagcaactttagggtgatgtgaactatgatttcaacctgtatgtgcaagttt 39780767  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 24904262 - 24904204
Alignment:
Q  211 tgaatttaagcaactttagggtgatgtgaactgtgatttcaacctgtatgtgaaagttt 269  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  24904262 tgaatttaagcaactttagggtgatgtgaactatgatttcaacctgtatgtgcaagttt 24904204  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 16693149 - 16693192
Alignment:
Q  28 ttcttctcttctcacaaatcacaattcacaatatcctttcttct 71  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  16693149 ttcttctcttctcacaaatcacaattcacaatctcctttcttct 16693192  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 14434623 - 14434669
Alignment:
Q  68 ttctatgtattgacatggtactacaatgaaaagaaacattgctgcca 114  Q
    ||||||||||||||| || ||| ||||||||||||||||||||||||    
T  14434623 ttctatgtattgacaaggcactgcaatgaaaagaaacattgctgcca 14434669  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 20737835 - 20737759
Alignment:
Q  68 ttctatgtattgacatggtactacaatgaaaagaaacattgctgccacattctaattctcacgttatttgttccttt 144  Q
    ||||||||||||| ||  || | |||||||||||||||||  |||||| |||||||||||||  ||| |||||||||    
T  20737835 ttctatgtattgaaatattattgcaatgaaaagaaacattattgccactttctaattctcacagtatatgttccttt 20737759  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 5014018 - 5013987
Alignment:
Q  28 ttcttctcttctcacaaatcacaattcacaat 59  Q
    ||||||||||||||||||||||||||||||||    
T  5014018 ttcttctcttctcacaaatcacaattcacaat 5013987  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 28535329 - 28535386
Alignment:
Q  17 tcacaatcggtttcttc---tcttctcacaaatcacaattcacaatatcctttcttct 71  Q
    |||||||||||||||||   |||||||||||||||||||||||||| |||||||||||    
T  28535329 tcacaatcggtttcttcctctcttctcacaaatcacaattcacaatctcctttcttct 28535386  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 11463140 - 11463101
Alignment:
Q  269 tggggaggggctttctgtcatctggtgcgagtttttgggt 308  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  11463140 tggggaagggctttctgtcatctggtgcaagtttttgggt 11463101  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 37173620 - 37173581
Alignment:
Q  68 ttctatgtattgacatggtactacaatgaaaagaaacatt 107  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  37173620 ttctatgtattgacaaggcactacaatgaaaagaaacatt 37173581  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 37177911 - 37177872
Alignment:
Q  68 ttctatgtattgacatggtactacaatgaaaagaaacatt 107  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  37177911 ttctatgtattgacaaggcactacaatgaaaagaaacatt 37177872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 16916304 - 16916273
Alignment:
Q  28 ttcttctcttctcacaaatcacaattcacaat 59  Q
    ||||||||||||||||||||||||||||||||    
T  16916304 ttcttctcttctcacaaatcacaattcacaat 16916273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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