View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6192_low_14 (Length: 296)
Name: NF6192_low_14
Description: NF6192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6192_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 142 - 283
Target Start/End: Complemental strand, 44999716 - 44999581
Alignment:
| Q |
142 |
aaattgaccctttctattatgatatgatatgattgtagtgtggcagccaaaaagtatcctcaaaaccgtatgttgggatggcgtgaatttgttgatggaa |
241 |
Q |
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| T |
44999716 |
aaattgaccctttctat---gatatgatatgattgtagtgtggcagccaaaaagtatcctcaaaaccgtatgttgggatggcgtgaatttgttgatggaa |
44999620 |
T |
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| Q |
242 |
aggtatttttatgatgacagtcagtccattttattttgtgtt |
283 |
Q |
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| T |
44999619 |
aggtattttt---atgacagacagtccattttattttgtgtt |
44999581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 44999835 - 44999751
Alignment:
| Q |
18 |
gttgaccacaatttaaaactatgcttagaatatactataaattgatcaaagagtaatgataattaactttcctaatgagcttcct |
102 |
Q |
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| T |
44999835 |
gttgaccacaatttaaaactatgcttagaatatactataaattgatcaaagagtaatgataattaactttcctaatgagcttcct |
44999751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 38764175 - 38764223
Alignment:
| Q |
197 |
atcctcaaaaccgtatgttgggatggcgtgaatttgttgatggaaaggt |
245 |
Q |
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| T |
38764175 |
atcctcaaaaccgcatgcttggatggcgtaaaattgttgatggaaaggt |
38764223 |
T |
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