View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6192_low_15 (Length: 260)
Name: NF6192_low_15
Description: NF6192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6192_low_15 |
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| [»] scaffold0028 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 118766 - 118524
Alignment:
| Q |
18 |
gattctgatttacatactgaatctgattctgaagatgatatgtttcaacaaaatacaaatgccgcaagcataccaataggagaacctttgttacaaggta |
117 |
Q |
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| T |
118766 |
gattctgatttacatactgaatctgattctgaagatgatatgttgcaacaaaatacaaatgccgcaagcataccaataggagaacctttgttacaaggta |
118667 |
T |
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| Q |
118 |
gtataataatttatattttaaatacattcattatttcagttaatatatggcatttatacttatgtagaactattattgtagattattttgatatcggtga |
217 |
Q |
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| T |
118666 |
ggataataatttatattttaaatacattcattatttcagtaaatatatggcatttatacttatgtagaactattattgtagattattttgacatcggtga |
118567 |
T |
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| Q |
218 |
tccagattgcatttgtcaacaatgtggagcagaaatgtggtat |
260 |
Q |
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| T |
118566 |
tccagattgcatttgtcaacaatgtggagcagaaatgtggtat |
118524 |
T |
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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 22072543 - 22072475
Alignment:
| Q |
192 |
attgtagattattttgatatcggtgatccagattgcatttgtcaacaatgtggagcagaaatgtggtat |
260 |
Q |
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| T |
22072543 |
attgtagattattttgatatcggagatcctgattgcatttgtcaacaatgtggagcagaaatgtggtat |
22072475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 22073097 - 22073015
Alignment:
| Q |
42 |
gattctgaagatgatatgtttcaacaaaatacaaatgccgcaagcataccaataggagaacctttgttacaaggtagtataat |
124 |
Q |
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| T |
22073097 |
gattctgaagatgatatagctgaacaaaatacaaatgccacaaacatacaagtaggagaacctgcattacaaggtaatataat |
22073015 |
T |
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