View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6192_low_16 (Length: 241)

Name: NF6192_low_16
Description: NF6192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6192_low_16
NF6192_low_16
[»] chr6 (11 HSPs)
chr6 (23-241)||(1459395-1459614)
chr6 (32-241)||(1470783-1470996)
chr6 (169-216)||(24417486-24417533)
chr6 (168-226)||(176328-176386)
chr6 (25-106)||(1453708-1453789)
chr6 (25-106)||(1465400-1465481)
chr6 (168-216)||(370784-370832)
chr6 (168-227)||(7564750-7564810)
chr6 (168-214)||(1442107-1442153)
chr6 (168-220)||(1453839-1453891)
chr6 (168-220)||(1465531-1465583)
[»] scaffold0044 (1 HSPs)
scaffold0044 (169-226)||(89137-89194)
[»] chr3 (8 HSPs)
chr3 (166-222)||(3754598-3754654)
chr3 (168-221)||(803217-803270)
chr3 (169-216)||(2456253-2456300)
chr3 (171-226)||(9608346-9608401)
chr3 (168-221)||(989395-989448)
chr3 (168-221)||(4142133-4142186)
chr3 (168-221)||(4157943-4157996)
chr3 (168-216)||(2442043-2442091)
[»] chr5 (3 HSPs)
chr5 (166-221)||(11081812-11081867)
chr5 (168-221)||(23766861-23766914)
chr5 (168-221)||(23816709-23816762)
[»] chr7 (1 HSPs)
chr7 (168-218)||(3927061-3927111)
[»] chr1 (2 HSPs)
chr1 (168-226)||(51381454-51381512)
chr1 (168-220)||(51832373-51832425)
[»] chr4 (2 HSPs)
chr4 (166-226)||(55419776-55419836)
chr4 (168-216)||(22672126-22672174)
[»] chr2 (1 HSPs)
chr2 (169-210)||(34560917-34560958)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 1459395 - 1459614
Alignment:
Q  23 aatacgattcttgtaattgtaaacatatatcttattatagaaatctaggaccacttggtcatcttcctcagaaatataaagcagtcttgtatagccaagt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1459395 aatacgattcttgtaattgtaaacatatatcttattatagaaatctaggaccacttggtcatcttcctcagaaatataaagcagtcttgtatagccaagt 1459494  T
Q  123 cttgaatagccataataaccaaggaattcagcaaacgggacaataaacaatttagtccaagattctttatttccaaaatctttcataacccaaatat-ca 221  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1459495 cttgaatagccataataatcaaggaattcagcaaacgggacaataaacaatttagtccaagattctttatttccaaaatctttcataacccaaatatcca 1459594  T
Q  222 aaaaagattttgcatgagca 241  Q
    |||||||||||| |||||||    
T  1459595 aaaaagattttgtatgagca 1459614  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 241
Target Start/End: Original strand, 1470783 - 1470996
Alignment:
Q  32 cttgtaattgtaaacatatatcttattatagaaatctaggaccacttggtcatcttcctcagaaatataaagcagtcttgtatagccaagtcttga-ata 130  Q
    |||||||||||||||| |||||||||||||||| || |||||||||||||||||||| ||  ||||||| |  ||||||||||||||||| | ||| | |    
T  1470783 cttgtaattgtaaacacatatcttattatagaattccaggaccacttggtcatcttcttcgaaaatatagactagtcttgtatagccaag-catgataca 1470881  T
Q  131 gccata---ataaccaaggaattcagcaaacgggacaataaacaatttagtccaagattctttatttccaaaatctttcataacccaaatat-caaaaaa 226  Q
     |||||   |||| |||||||||   ||| |||  || |||||||||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  1470882 accataattataatcaaggaatttcacaaccggagcagtaaacaatttagaccaagaatctttatttccataatctttcataacccaaatatccaaaaaa 1470981  T
Q  227 gattttgcatgagca 241  Q
    ||||| | |||||||    
T  1470982 gatttggtatgagca 1470996  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 24417486 - 24417533
Alignment:
Q  169 acaatttagtccaagattctttatttccaaaatctttcataacccaaa 216  Q
    ||||||||||||||||||||||||||||| | |||||||||| |||||    
T  24417486 acaatttagtccaagattctttatttccatattctttcataatccaaa 24417533  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 176386 - 176328
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatcaaaaaa 226  Q
    ||||||||||||||||| |||||||||||| |||| ||||||  ||||||||| |||||    
T  176386 aacaatttagtccaagaatctttatttccataatcattcatacgccaaatatccaaaaa 176328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 1453708 - 1453789
Alignment:
Q  25 tacgattcttgtaattgtaaacatatatcttattatagaaatctaggaccacttggtcatcttcctcagaaatataaagcag 106  Q
    ||||||||||||||||||||||||||| || || ||  || || | || ||||||| |||| ||||| ||||||||||||||    
T  1453708 tacgattcttgtaattgtaaacatatacctcataatttaagtcgaagaacacttggccatcctcctcggaaatataaagcag 1453789  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 1465400 - 1465481
Alignment:
Q  25 tacgattcttgtaattgtaaacatatatcttattatagaaatctaggaccacttggtcatcttcctcagaaatataaagcag 106  Q
    ||||||||||||||||||||||||||| || || ||  || || | || ||||||| |||| ||||| ||||||||||||||    
T  1465400 tacgattcttgtaattgtaaacatatacctcataatttaagtcgaagaacacttggccatcctcctcggaaatataaagcag 1465481  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 370784 - 370832
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaa 216  Q
    ||||||||||||||||| |||||||||||| |||  |||||||||||||    
T  370784 aacaatttagtccaagaatctttatttccataattcttcataacccaaa 370832  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 7564750 - 7564810
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaata-tcaaaaaag 227  Q
    ||||||||||||||||| || || |||||| |||| ||||||||||||||| |||||||||    
T  7564750 aacaatttagtccaagaatccttgtttccataatccttcataacccaaatattcaaaaaag 7564810  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 1442107 - 1442153
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataaccca 214  Q
    ||||||||||||||||| |||||| ||||| |||| |||||||||||    
T  1442107 aacaatttagtccaagaatctttaattccataatccttcataaccca 1442153  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 1453839 - 1453891
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatc 220  Q
    ||||||||| ||||||| |||||||||||| |||  ||||||||||| |||||    
T  1453839 aacaatttattccaagagtctttatttccataatacttcataacccagatatc 1453891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 1465531 - 1465583
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatc 220  Q
    ||||||||| ||||||| |||||||||||| |||  ||||||||||| |||||    
T  1465531 aacaatttattccaagagtctttatttccataatacttcataacccagatatc 1465583  T

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Target: scaffold0044 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 89194 - 89137
Alignment:
Q  169 acaatttagtccaagattctttatttccaaaatctttcataacccaaatatcaaaaaa 226  Q
    |||||||||||||||| |||||||||||| | || |||||||||||||||||||||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaa 89137  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 3754654 - 3754598
Alignment:
Q  166 taaacaatttagtccaagattctttatttccaaaatctttcataacccaaatatcaa 222  Q
    ||||||||||||||||||| |||||||||||| | || ||||||||||||| |||||    
T  3754654 taaacaatttagtccaagactctttatttccatattccttcataacccaaacatcaa 3754598  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 803217 - 803270
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatca 221  Q
    ||||| ||||||||||| |||||||||||| | |||||||||||||||| ||||    
T  803217 aacaacttagtccaagactctttatttccatattctttcataacccaaacatca 803270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 2456300 - 2456253
Alignment:
Q  169 acaatttagtccaagattctttatttccaaaatctttcataacccaaa 216  Q
    |||||||||||||||| |||||||||||| | || |||||||||||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaa 2456253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 9608346 - 9608401
Alignment:
Q  171 aatttagtccaagattctttatttccaaaatctttcataacccaaatatcaaaaaa 226  Q
    |||||||||||||| ||| |||||||| | || ||||||||||||| |||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaa 9608401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 989448 - 989395
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatca 221  Q
    ||||||||||||||||| |||||||||||  | |||||||| ||||||| ||||    
T  989448 aacaatttagtccaagactctttatttccgtactctttcattacccaaacatca 989395  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 4142133 - 4142186
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatca 221  Q
    ||||||||||||||||| |||||||||||| | || ||||||| ||||| ||||    
T  4142133 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 4142186  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 4157943 - 4157996
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatca 221  Q
    ||||||||||||||||| |||||||||||| | || ||||||| ||||| ||||    
T  4157943 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 4157996  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 2442091 - 2442043
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaa 216  Q
    ||||||||||||||||| |||||||||||| | || ||||||| |||||    
T  2442091 aacaatttagtccaagaatctttatttccatactccttcataatccaaa 2442043  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 11081867 - 11081812
Alignment:
Q  166 taaacaatttagtccaagattctttatttccaaaatctttcataacccaaatatca 221  Q
    ||||||||||||||||||| |||||||||||| | || ||||||||||||| ||||    
T  11081867 taaacaatttagtccaagactctttatttccatactccttcataacccaaacatca 11081812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 23766861 - 23766914
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatca 221  Q
    ||||||||||||||||| |||||||||||| | |||||||||| ||||| ||||    
T  23766861 aacaatttagtccaagactctttatttccatattctttcataatccaaacatca 23766914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 23816709 - 23816762
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatca 221  Q
    ||||||||||||||||| |||||||||||| | |||||||||| ||||| ||||    
T  23816709 aacaatttagtccaagactctttatttccatattctttcataatccaaacatca 23816762  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 3927111 - 3927061
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaata 218  Q
    ||||||||||||||||| | |||||||||| |||| |||||||||||||||    
T  3927111 aacaatttagtccaagaatttttatttccataatccttcataacccaaata 3927061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 51381454 - 51381512
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatcaaaaaa 226  Q
    ||||||||||||||||| |||| ||||||| | |||||||||| |||||||||| ||||    
T  51381454 aacaatttagtccaagactcttcatttccatattctttcataatccaaatatcagaaaa 51381512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 51832425 - 51832373
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatc 220  Q
    ||||||||||||||||||| || ||||||| | |||||||| | |||||||||    
T  51832425 aacaatttagtccaagattgttcatttccatattctttcattatccaaatatc 51832373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 55419836 - 55419776
Alignment:
Q  166 taaacaatttagtccaagattctttatttccaaaatctttcataacccaaatatcaaaaaa 226  Q
    ||||||||||||||||||| |||||||||||| || | ||||||| ||| ||||| |||||    
T  55419836 taaacaatttagtccaagaatctttatttccataaaccttcataagccagatatccaaaaa 55419776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 22672126 - 22672174
Alignment:
Q  168 aacaatttagtccaagattctttatttccaaaatctttcataacccaaa 216  Q
    |||||||||||||||||||| ||||||||| | || ||||| |||||||    
T  22672126 aacaatttagtccaagattccttatttccatattccttcattacccaaa 22672174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 34560917 - 34560958
Alignment:
Q  169 acaatttagtccaagattctttatttccaaaatctttcataa 210  Q
    |||||||||||||||||| |||||||||| | ||||||||||    
T  34560917 acaatttagtccaagattttttatttccatattctttcataa 34560958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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