View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6192_low_22 (Length: 228)
Name: NF6192_low_22
Description: NF6192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6192_low_22 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 44694072 - 44694297
Alignment:
| Q |
6 |
atagttcctttaatcacttctattactgcaaccactactacttcacgtgccaatgatcacgttcacgtgcatcaatctcacgtaaccacagtgaggcgat |
105 |
Q |
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| T |
44694072 |
atagttcctttaatcacttctattagtgcaactactactacttcacgtgccaatgatcacgttcacgtgcatcaatctcacgtaaccacagtgaggcgat |
44694171 |
T |
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| Q |
106 |
caaacaagtcctccatgtttaccagattcataggtagctccgacagaaacaattgcctt---gcagtcaacgacgcctttaccgcggagaatgcagacag |
202 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
44694172 |
caaacaagtcctccatgttttccagattcataggtagctccgccagaaacaattgccttgcagcagtcaacgacgccttcaccgcggagaatgcagacag |
44694271 |
T |
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| Q |
203 |
agctgtgaaagaaggagatggacaaa |
228 |
Q |
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| T |
44694272 |
aactgtgaaagaaggagatggacaaa |
44694297 |
T |
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