View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6192_low_3 (Length: 483)
Name: NF6192_low_3
Description: NF6192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6192_low_3 |
 | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 49281545 - 49281085
Alignment:
| Q |
18 |
tggaacaagtttacaaatggtgttggtgcaaacaagttctatgtaatatattatggcataaaaattgctcttaatttttactcaaactgaaaactgacat |
117 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
49281545 |
tggaacaagtttacaaatggtgtcggcgcaaacaagttctatgtaatatattgtggcataaaaattgctcttaatttttacttaaactgaaaactgatag |
49281446 |
T |
|
| Q |
118 |
accataaagattaatgtgaatagccaaattatcattcttgattttatttaaaacccaaatttctgcttataatttagttatgttaaatttttaaaatata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49281445 |
accataaagattaatgtgaatagccaaattattaatcttggttttatttaaaacccaaatttctgcttataatttagttatgttaaatttttaaaatata |
49281346 |
T |
|
| Q |
218 |
ttaagcagaaattgatatatacaaaactgaattaaccgaactaagccgcacatttgaccggcttaaccgtttacatcgaaccgactaaattaatacctaa |
317 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
49281345 |
ttaagcagaaattgatatatataaaaccgaattaaccgaactaaaccacatatttgaccggcttaaccgtttacatcgaaccgactaaaccaatgcctaa |
49281246 |
T |
|
| Q |
318 |
gttggtcataaataatttacgaatatgcaatcgttggtttaaacggttttaagttttgaaaccgatttcgaacctaataaaccgac-tatccacccctaa |
416 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| | ||| ||||||| |
|
|
| T |
49281245 |
gttggtcataaataatttacaaatatgcaaccgttggtttaaacggttttaaattttgaaaccgatttcgaatctaatagaccgacttgtccgcccctaa |
49281146 |
T |
|
| Q |
417 |
---aactatgaataaacataccatttacgtggactgactggtttggtccactccattgatga |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
49281145 |
tttaactatgaataaacataccatttacgtggaccgactggtttggtcc-ctccattgatga |
49281085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 415
Target Start/End: Original strand, 13787451 - 13787847
Alignment:
| Q |
20 |
gaacaagtttacaaatggtgttggtgcaaacaagttctatgtaatatattatggcataaaaattgctcttaatttttactcaaactgaaaactgacatac |
119 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | |
|
|
| T |
13787451 |
gaacaagtttacaaatggtgttggtgctaacaagttctatgtaatatattatggcataaaaattgctcttgatttttacttaaactgaaaactgacaggc |
13787550 |
T |
|
| Q |
120 |
cataaagattaatgtgaatagccaaattatcattcttgattttatttaaaacccaaatttctgcttataatttagttatgttaaatttttaaaatatatt |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||| ||||||| |||||||||||||| |||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
13787551 |
cataaagattaagatgaatagccaaattattattcttggttttattgaaaacccaaatttcagcttatgatttggttatgttaaatttttaaaatatatg |
13787650 |
T |
|
| Q |
220 |
aagcagaaattgatatatacaaaactgaattaaccgaactaagccgcacatttgaccggcttaaccgtttacatcgaaccgactaaattaatacctaagt |
319 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| || ||||||| |
|
|
| T |
13787651 |
gagtagagattgatatatacaaaaccgaattaatcgaactaagctgcacatttgaccggcttaaccgtttacaccgaaccgactaaaccgattcctaagt |
13787750 |
T |
|
| Q |
320 |
tggtcataaataatttacgaatatgcaatcgttggtttaaacggtttt-aagttttgaaaccgatttcgaacctaataaaccgactatccaccccta |
415 |
Q |
| |
|
|||||| |||| |||||||||||| || ||||||||||||||||||| |||||||||||||||||| |||||||| || |||| |||||||||| |
|
|
| T |
13787751 |
tggtcagaaatggtttacgaatatgaaaccgttggtttaaacggttttcaagttttgaaaccgattttgaacctaaccgactgactgtccaccccta |
13787847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 195 - 415
Target Start/End: Complemental strand, 3835090 - 3834870
Alignment:
| Q |
195 |
ttatgttaaatttttaaaatatattaagcagaaattgatatatacaaaactgaattaaccgaactaagccgcacatttgaccggcttaaccgtttacatc |
294 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||| |||| | |
|
|
| T |
3835090 |
ttatgttaaatttttaaaatattttaagcaaggattgatatatacaaaaccaaattaatcgaactaagccacacatttgaccggcttaaccgtctacacc |
3834991 |
T |
|
| Q |
295 |
gaaccgactaaattaatacctaagttggtcataaataatttacgaatatgcaatcgttggtttaaacggttttaagttttgaaaccgatttcgaacctaa |
394 |
Q |
| |
|
||||||| |||| || |||||||||||| | || |||| ||||||| || ||||||||||||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
3834990 |
gaaccgattaaaccgatgcctaagttggtcggatatggtttaggaatatgaaaccgttggtttaaactgtttcaagttttgaaaccgatttcgaacttaa |
3834891 |
T |
|
| Q |
395 |
taaaccgactatccaccccta |
415 |
Q |
| |
|
| ||||| |||||||||| |
|
|
| T |
3834890 |
ccgaacgactgtccaccccta |
3834870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 13936301 - 13936699
Alignment:
| Q |
18 |
tggaacaagtttacaaatggtgttggtgcaaacaagttctatgtaatatattatggcataaaaattgctcttaatttttactcaaactgaaaactgacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| ||| |||||||||||| |
|
|
| T |
13936301 |
tggaacaagtttacaaatggtgttggtgcaaacaagttctatctaatatattatggcataaaaattgctcttgatgtttacttaaattgaaaactgacag |
13936400 |
T |
|
| Q |
118 |
accataaagattaatgtgaatagccaaattatcattcttgattttatttaaaacccaaatttctgcttataatttagttatgttaaatttttaaaatata |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| ||| ||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
13936401 |
gccataaagattaatatgaatagccaaattattatttttggttttattgaaaacccaaatttcagcttataatttggttatgttaaacttttaaaatata |
13936500 |
T |
|
| Q |
218 |
ttaagcagaaattgatatatacaaaactgaattaaccgaactaagccgcacatttgaccggcttaaccgtttacatcgaaccgactaaattaatacctaa |
317 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
13936501 |
ttaaggagggattgatatatacaaaaccgaattaaccgaactaagccgcacatttgaccggcttaaccgtttacaccgaaccgactaaaccgatgcctaa |
13936600 |
T |
|
| Q |
318 |
gttggtcataaataatttacgaatatgcaatcgttggtttaaacggttttaagttttgaaaccgatttcgaacctaataaaccgactatccacccctaa |
416 |
Q |
| |
|
||||||| |||| ||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
13936601 |
gttggtcggaaatggtttacgaatatgcaaccgctggtttaaacggtttcaagttttgaaaccgatttcgaacctaaccgaccgactgtccacccctaa |
13936699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 246 - 385
Target Start/End: Complemental strand, 38043333 - 38043194
Alignment:
| Q |
246 |
gaattaaccgaactaagccgcacatttgaccggcttaaccgtttacatcgaaccgactaaattaatacctaagttggtcataaataatttacgaatatgc |
345 |
Q |
| |
|
||||||||||||| || || ||||||| |||||||||||||| |||| ||||||||||||| || |||||||||||| |||| |||| | |||||| |
|
|
| T |
38043333 |
gaattaaccgaaccaaaccacacatttcaccggcttaaccgtctacaccgaaccgactaaaccgatgcctaagttggtcggaaatggtttagggatatgc |
38043234 |
T |
|
| Q |
346 |
aatcgttggtttaaacggttttaagttttgaaaccgattt |
385 |
Q |
| |
|
|| |||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
38043233 |
aaccgttggtttaaacggtttcaagttttggaaccgattt |
38043194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 13309915 - 13310316
Alignment:
| Q |
18 |
tggaacaagtttacaaatggtgttggtgcaaacaagttctatgtaatatattatggcataaaaattgctcttaatttttactcaaactgaaaactgacat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||| |
|
|
| T |
13309915 |
tggaacaagtttacaaatggtgttggtgctaacaagttctatgtaatatattatggcataaaaattgctcttgatttttgcttaaactgaaaactgacag |
13310014 |
T |
|
| Q |
118 |
accataaagattaatgtgaatagccaaattatcatt---cttgattttatttaaaacccaaatttctgcttataatttagttatgttaaatttttaaaat |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| |||| ||||||| |||||||||||||| |||||| |||| ||||||||||||||||||||| |
|
|
| T |
13310015 |
gccataaagattaatatgaatagccaaattattattattcttggttttattgaaaacccaaatttcagcttatgatttggttatgttaaatttttaaaat |
13310114 |
T |
|
| Q |
215 |
atattaagcagaaattgatatatacaaaactgaattaaccgaactaagccgcacatttgaccggcttaaccgtttacatcgaaccgactaaattaatacc |
314 |
Q |
| |
|
|||| || || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| | || || |
|
|
| T |
13310115 |
atatggagtagggattgatatatacaaaaccgaattaaccgagctaagccgcacatttgaccggcttaaccgtttacaccgaaccgactaaactgatgcc |
13310214 |
T |
|
| Q |
315 |
taagttggtcataaataatttacgaatatgcaatcgttggtttaaacggttttaagttttgaaaccgatttcgaacctaataaaccgactatccacccct |
414 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
13310215 |
taagttggtcggaaatggtttacgaatatgcaaccgttggtttaaacggtttcaagttttgaaaccgatttccaacctaaccgaccgactgtccacccct |
13310314 |
T |
|
| Q |
415 |
aa |
416 |
Q |
| |
|
|| |
|
|
| T |
13310315 |
aa |
13310316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 14591652 - 14591252
Alignment:
| Q |
18 |
tggaacaagtttacaaatggtgttggtgcaaacaagttctatgtaata---tattatggcataaaaattgctcttaatttttactcaaactgaaaactga |
114 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
14591652 |
tggaacaagtttacaaatgttgttggtgctaacaagttctatgtaataatatattatggcataaaaattgctcttgatttttatttaaactgaaaactga |
14591553 |
T |
|
| Q |
115 |
cataccataaagattaatgtgaatagccaaattatcattcttgattttatttaaaacccaaatttctgcttataatttagttatgttaaatttttaaaat |
214 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||| ||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
14591552 |
caggccataaagattaatatgaatagccaaattattattcttggttttattgaaaacccaaatttcagcttataatttggttatgttaaatttttaaaat |
14591453 |
T |
|
| Q |
215 |
atattaagcagaaattgatatatacaaaactgaattaaccgaactaagccgcacatttgaccggcttaaccgtttacatcgaaccgactaaattaatacc |
314 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||| | || || |
|
|
| T |
14591452 |
atatggagcagggattgatatatacaaaatcgaattaaccgaactaagccgcacatttgaccagcttaatcgtttacactgaaccgactaaactgatgcc |
14591353 |
T |
|
| Q |
315 |
taagttggtcataaataatttacgaatatgcaatcgttggtttaaacggttttaagttttgaaaccgatttcgaacctaataaaccgactatccacccct |
414 |
Q |
| |
|
|| ||||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
14591352 |
tatgttggtcgaaaatggtttacgaatatgcaaccgttggtttaaacggtttcaagttttgaaaccgatttcgaacataaccgaccgactgtccacccct |
14591253 |
T |
|
| Q |
415 |
a |
415 |
Q |
| |
|
| |
|
|
| T |
14591252 |
a |
14591252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 195 - 415
Target Start/End: Complemental strand, 10009 - 9788
Alignment:
| Q |
195 |
ttatgttaaatttttaaaatatattaagcagaaattgatatatacaaaactgaattaaccgaactaagccgcacatttgaccggcttaaccgtttacatc |
294 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| | |
|
|
| T |
10009 |
ttatgttaaatttttaaaatattttaagcaaggattgatatatacaaaaccgaattaaccgaactaagccacacatttgaccggcttaaccgtctacacc |
9910 |
T |
|
| Q |
295 |
gaaccgactaaattaatacctaagttggtcataaat-aatttacgaatatgcaatcgttggtttaaacggttttaagttttgaaaccgatttcgaaccta |
393 |
Q |
| |
|
|||||||||||| | || |||||||||||| |||| ||| ||||||| || ||||||||||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
9909 |
gaaccgactaaactgatgcctaagttggtcggaaatggtttttggaatatgaaactgttggtttaaacgatttcaagttttgaaatcgatttcgaaccta |
9810 |
T |
|
| Q |
394 |
ataaaccgactatccaccccta |
415 |
Q |
| |
|
| | ||||| |||||||||| |
|
|
| T |
9809 |
accgaacgactgtccaccccta |
9788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 106 - 292
Target Start/End: Complemental strand, 21279985 - 21279798
Alignment:
| Q |
106 |
gaaaactgacataccataaagattaatgtgaatagccaaattatcattcttgattttatttaaaacccaaatttctgcttataatttag-ttatgttaaa |
204 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||| ||||||| || ||||||| ||||||| || ||| ||| | ||||||||||| | ||| ||||| |
|
|
| T |
21279985 |
gaaaattgacaggccataaagattaatatgaatggccaaatgattattcttggttttattgaatacctaaagtatagcttataattttgattaggttaat |
21279886 |
T |
|
| Q |
205 |
tttttaaaatatattaagcagaaattgatatatacaaaactgaattaaccgaactaagccgcacatttgaccggcttaaccgtttaca |
292 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||||||| |||||||| ||||||| || || ||||||| ||||||| ||||||| |
|
|
| T |
21279885 |
tttttaaaatatattgggcaaagtttgatatatacaaaacagaattaactgaactaaaccacatgtttgaccagcttaacagtttaca |
21279798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 21279749 - 21279705
Alignment:
| Q |
350 |
gttggtttaaacggttttaagttttgaaaccgatttcgaacctaa |
394 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
21279749 |
gttggtttaaacggtttcaagttttgaaactgatttcgaacctaa |
21279705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 4923942 - 4923888
Alignment:
| Q |
340 |
atatgcaatcgttggtttaaacggttttaagttttgaaaccgatttcgaacctaa |
394 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
4923942 |
atatgcaaccgttggtataaacggtttcaagttttgggaccgatttcgaacctaa |
4923888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 4924021 - 4923973
Alignment:
| Q |
229 |
ttgatatatacaaaactgaattaaccgaactaagccgcacatttgaccg |
277 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
4924021 |
ttgatacatacaaaaccgaattaaccgaactaaaccacacatttgaccg |
4923973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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