View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6192_low_7 (Length: 379)

Name: NF6192_low_7
Description: NF6192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6192_low_7
NF6192_low_7
[»] chr8 (3 HSPs)
chr8 (7-287)||(29636724-29637005)
chr8 (42-200)||(41441152-41441312)
chr8 (80-135)||(39978305-39978361)
[»] chr1 (5 HSPs)
chr1 (39-209)||(33942074-33942246)
chr1 (229-290)||(46209533-46209594)
chr1 (229-287)||(46208009-46208067)
chr1 (80-131)||(35477734-35477786)
chr1 (180-287)||(50269307-50269413)
[»] chr2 (8 HSPs)
chr2 (169-288)||(45231505-45231624)
chr2 (229-290)||(5326193-5326254)
chr2 (229-287)||(20193222-20193280)
chr2 (231-288)||(19194073-19194130)
chr2 (229-288)||(20188308-20188367)
chr2 (232-287)||(35844940-35844995)
chr2 (237-288)||(45230040-45230091)
chr2 (231-288)||(35935367-35935424)
[»] chr5 (5 HSPs)
chr5 (145-289)||(37253398-37253543)
chr5 (232-286)||(21550031-21550085)
chr5 (232-284)||(21550365-21550417)
chr5 (231-290)||(38545504-38545563)
chr5 (80-135)||(37253603-37253659)
[»] chr4 (6 HSPs)
chr4 (169-284)||(47489293-47489407)
chr4 (229-290)||(47487831-47487892)
chr4 (288-328)||(49461902-49461942)
chr4 (80-135)||(34487063-34487119)
chr4 (238-285)||(51986232-51986279)
chr4 (231-282)||(32335851-32335902)
[»] chr3 (7 HSPs)
chr3 (145-287)||(22341231-22341374)
chr3 (145-287)||(22341767-22341908)
chr3 (232-289)||(37282952-37283009)
chr3 (231-288)||(2683198-2683255)
chr3 (80-135)||(22341659-22341715)
chr3 (229-284)||(46692968-46693023)
chr3 (90-135)||(53196826-53196872)
[»] scaffold0169 (1 HSPs)
scaffold0169 (229-290)||(24999-25060)
[»] scaffold0010 (1 HSPs)
scaffold0010 (231-288)||(128350-128407)
[»] chr7 (8 HSPs)
chr7 (233-290)||(28086469-28086526)
chr7 (229-290)||(33734980-33735040)
chr7 (231-296)||(24730981-24731046)
chr7 (229-289)||(1920931-1920991)
chr7 (80-135)||(28086676-28086732)
chr7 (231-287)||(45782021-45782077)
chr7 (148-286)||(28087666-28087805)
chr7 (234-287)||(9154297-9154350)
[»] scaffold0210 (2 HSPs)
scaffold0210 (80-135)||(19219-19275)
scaffold0210 (80-135)||(27111-27167)
[»] chr6 (3 HSPs)
chr6 (229-291)||(655522-655584)
chr6 (231-288)||(9362741-9362798)
chr6 (234-290)||(13118569-13118625)
[»] scaffold0005 (1 HSPs)
scaffold0005 (231-287)||(205185-205241)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 287
Target Start/End: Original strand, 29636724 - 29637005
Alignment:
Q  7 gagagaagaagatgagtacaagtgacttatgcaggttgaagaagatgaaatgtaattggttttaaagaaaactattagctaagagagggagcatgtgatt 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29636724 gagagaaggagatgagtacaagtgacttatgcaggttgaagaagatgaaatgtaattggttttaaagaaaactattagctaagagagggagcatgtgatt 29636823  T
Q  107 cttttaattttgaccattgatttttaatcttgagccatgtggcctttgaccgagtcaaaatt-gagggggcttgtgagttgcaaaaaggggtgaaattat 205  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||     
T  29636824 cttttaatcttgaccattgatttttaatcttgagccatgtggcctttgaccgagtcaaaattagagggggcatgtgagttgcaaaagggggtgaaattag 29636923  T
Q  206 ggggttgaaaagtggnnnnnnnnaatagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcc 287  Q
    |||| || |||||          ||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  29636924 ggggctggaaagtatttttttttaatagggggtcaaaattgctacggagccaaatatagagggccaaaagtgcattttagcc 29637005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 41441152 - 41441312
Alignment:
Q  42 ttgaagaagatgaaatgtaattggttttaaagaaaactattagctaagagagggagcatgtga-ttcttttaattttgaccattgatttttaatcttgag 140  Q
    |||||||||||||||||||| ||| ||||| ||||| |||||||||||||| ||||||||||| || ||||||| ||||||| | |||||||||||||||    
T  41441152 ttgaagaagatgaaatgtaaatgggtttaaggaaaagtattagctaagagaaggagcatgtgagttattttaatcttgaccactaatttttaatcttgag 41441251  T
Q  141 ccatgtggcctttgaccgagtcaaaatt-gagggggcttgtgagttgcaaaaaggggtgaa 200  Q
    |||  ||||||||||||   |||||||| |||||||| | ||||||| |||| ||| ||||    
T  41441252 ccacatggcctttgacccgatcaaaattagagggggcctatgagttgtaaaaggggatgaa 41441312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 39978305 - 39978361
Alignment:
Q  80 attagctaagagagggagcatgtga-ttcttttaattttgaccattgatttttaatc 135  Q
    |||||||||||||||||||||||||   |||||||| ||||||||| ||||||||||    
T  39978305 attagctaagagagggagcatgtgaggacttttaatcttgaccattaatttttaatc 39978361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 39 - 209
Target Start/End: Complemental strand, 33942246 - 33942074
Alignment:
Q  39 aggttgaagaagatgaaatgtaattggttttaaagaaaactattagctaagagagggagcatgtga-ttcttttaattttgaccattgatttttaatctt 137  Q
    ||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||| || ||||||| ||||||| ||||||||||||||    
T  33942246 aggttgaagaagatgaaatgtaaatgggtttaaggaaaagtattagctaagagagggagcatgtgagttattttaatcttgaccactgatttttaatctt 33942147  T
Q  138 gagccatgtggcctttgaccgagtcaaaatt-gagggggcttgtgagttgcaaaaaggggtgaaattatgggg 209  Q
    ||||||  ||||||||||||   || ||||| |||||||| | ||||||| |||| ||| |||| ||| ||||    
T  33942146 gagccacatggcctttgacccgatcgaaattagagggggcctatgagttgtaaaaggggatgaagttaggggg 33942074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 46209533 - 46209594
Alignment:
Q  229 aatagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcctaa 290  Q
    |||||| ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||    
T  46209533 aataggaggccaaaattgctacggagccaaacatagggggctaaaagtgcattttagcctaa 46209594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 46208067 - 46208009
Alignment:
Q  229 aatagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcc 287  Q
    |||||||||||||||||| ||| || |||||||||||||  ||||| ||||||||||||    
T  46208067 aatagggggccaaaattgctacagaaccaaacatagaggatcaaaaatgcattttagcc 46208009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 35477786 - 35477734
Alignment:
Q  80 attagctaagagagggagcatgtg-attcttttaattttgaccattgattttt 131  Q
    |||||||||||||||||||||||| || |||||||| ||||||||| ||||||    
T  35477786 attagctaagagagggagcatgtgaatacttttaatcttgaccattaattttt 35477734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 287
Target Start/End: Complemental strand, 50269413 - 50269307
Alignment:
Q  180 tgagttgcaaaaaggggtgaaattatggggttgaaaagtggnnnnnnnnaatagggggccaaaattgatacggagccaaacatagagggccaaaagtgca 279  Q
    |||||||||||| |||||||||||| |||| || ||||||         |||||||| ||||||||| |||| ||  |||||||| ||| ||||||||||    
T  50269413 tgagttgcaaaagggggtgaaattagggggctggaaagtgattttttttaatagggg-ccaaaattgctacgaaggtaaacatagggggtcaaaagtgca 50269315  T
Q  280 ttttagcc 287  Q
    ||||||||    
T  50269314 ttttagcc 50269307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 45231505 - 45231624
Alignment:
Q  169 gagggggcttgtgagttgcaaaaaggggtgaaattatggggttgaaaagtggnnnnnnnnaatagggggccaaaattgatacggagccaaacatagaggg 268  Q
    |||||||| | || ||||||||| |||||||| ||| ||||||| ||||||         |||||||||||||||||| ||||||||| ||||||| |||    
T  45231505 gagggggcctatgggttgcaaaagggggtgaagttagggggttggaaagtgattgtttttaatagggggccaaaattgctacggagcctaacataggggg 45231604  T
Q  269 ccaaaagtgcattttagcct 288  Q
    ||||||||||||||||||||    
T  45231605 ccaaaagtgcattttagcct 45231624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 5326254 - 5326193
Alignment:
Q  229 aatagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcctaa 290  Q
    |||||| ||||||||||| ||| |||||||| |||| |||||||||||||||||||||||||    
T  5326254 aataggaggccaaaattgctacagagccaaatatagggggccaaaagtgcattttagcctaa 5326193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 20193222 - 20193280
Alignment:
Q  229 aatagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcc 287  Q
    |||||||||||||||||| ||||| ||||||| ||| || |||||||||||||||||||    
T  20193222 aatagggggccaaaattgctacggggccaaacttaggggaccaaaagtgcattttagcc 20193280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 19194130 - 19194073
Alignment:
Q  231 tagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcct 288  Q
    |||||||||||||||| |||| || ||||||||| ||||||||||||||||| |||||    
T  19194130 tagggggccaaaattgctacgaagacaaacatagggggccaaaagtgcatttaagcct 19194073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 288
Target Start/End: Complemental strand, 20188367 - 20188308
Alignment:
Q  229 aatagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcct 288  Q
    |||||||||||||||||| ||||| ||||||  ||| |||| ||||||||||||||||||    
T  20188367 aatagggggccaaaattgctacggggccaaatttagggggcaaaaagtgcattttagcct 20188308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 35844940 - 35844995
Alignment:
Q  232 agggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcc 287  Q
    |||||| |||||||| |||| || ||||||||||||||||||| ||||||| ||||    
T  35844940 agggggtcaaaattgctacgaaggcaaacatagagggccaaaaatgcatttaagcc 35844995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 45230091 - 45230040
Alignment:
Q  237 gccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcct 288  Q
    |||||||||  |||| |||||||||||| | |||||||||||||||||||||    
T  45230091 gccaaaattactacgaagccaaacatagggagccaaaagtgcattttagcct 45230040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 35935424 - 35935367
Alignment:
Q  231 tagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcct 288  Q
    |||||||||||||||| ||||  | |||| |||| ||||||||||||||||| |||||    
T  35935424 tagggggccaaaattgctacgacggcaaatatagggggccaaaagtgcatttaagcct 35935367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 289
Target Start/End: Complemental strand, 37253543 - 37253398
Alignment:
Q  145 gtggcctttgaccgagtcaaaatt-gagggggcttgtgagttgcaaaaaggggtgaaattatggggttgaaaagtggnnnnnnnnaatagggggccaaaa 243  Q
    |||||||||||||| ||||||||| |||||||| | | | |||||||| |||||||| ||| ||||||| ||||||         |||| ||||||||||    
T  37253543 gtggcctttgaccgggtcaaaattagagggggcctataaattgcaaaagggggtgaagttagggggttggaaagtgatattttttaataaggggccaaaa 37253444  T
Q  244 ttgatacggagccaaacatagagggccaaaagtgcattttagccta 289  Q
    ||| ||| |||||||||||||| || ||||| ||||||||||||||    
T  37253443 ttgctacagagccaaacatagaaggtcaaaaatgcattttagccta 37253398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 21550085 - 21550031
Alignment:
Q  232 agggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagc 286  Q
    ||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  21550085 aggggcccaaaattgctacggggccaaacatagggggccaaaagtgcattttagc 21550031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 21550365 - 21550417
Alignment:
Q  232 agggggccaaaattgatacggagccaaacatagagggccaaaagtgcatttta 284  Q
    ||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  21550365 aggggaccaaaattgctacggtgccaaacatagacggccaaaagtgcatttta 21550417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 38545504 - 38545563
Alignment:
Q  231 tagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcctaa 290  Q
    |||||||| ||||||| ||||| | ||||||||||||||||||||| ||||| |||||||    
T  38545504 tagggggctaaaattgctacggtggcaaacatagagggccaaaagtacatttaagcctaa 38545563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 37253659 - 37253603
Alignment:
Q  80 attagctaagagagggagcatgtg-attcttttaattttgaccattgatttttaatc 135  Q
    |||||||||||||||||||||||| || |||||||| ||||||| | | ||||||||    
T  37253659 attagctaagagagggagcatgtgaatacttttaatcttgaccactaaattttaatc 37253603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 47489293 - 47489407
Alignment:
Q  169 gagggggcttgtgagttgcaaaaaggggtgaaattatggggttgaaaagtggnnnnnnnnaatagggggccaaaattgatacggagccaaacatagaggg 268  Q
    |||||||||| || ||||||||| |||||||| ||| ||||||| ||||||         |||| ||||||||||||| ||||||||| ||||||| |||    
T  47489293 gagggggcttatgggttgcaaaagggggtgaagttagggggttggaaagtgattttttttaatatggggccaaaattgctacggagcctaacatag-ggg 47489391  T
Q  269 ccaaaagtgcatttta 284  Q
    ||||||||||||||||    
T  47489392 ccaaaagtgcatttta 47489407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 47487892 - 47487831
Alignment:
Q  229 aatagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcctaa 290  Q
    |||| ||||||||||||| |||| |||||||||||| ||| |||||||||||||||||||||    
T  47487892 aataaggggccaaaattgctacgaagccaaacatagggggtcaaaagtgcattttagcctaa 47487831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 49461942 - 49461902
Alignment:
Q  288 taagtttttccagttggtttcattcaattttggtgttacat 328  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  49461942 taagtttttccagttggtttcattcaattttggtgttacat 49461902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 34487119 - 34487063
Alignment:
Q  80 attagctaagagagggagcatgtga-ttcttttaattttgaccattgatttttaatc 135  Q
    |||||||| || ||||||||||||| |||||||||| ||||||||||||||||||||    
T  34487119 attagctaggacagggagcatgtgagttcttttaatcttgaccattgatttttaatc 34487063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 51986279 - 51986232
Alignment:
Q  238 ccaaaattgatacggagccaaacatagagggccaaaagtgcattttag 285  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  51986279 ccaaaattgctacggagtcaaacatagaggaccaaaagtgcattttag 51986232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 32335902 - 32335851
Alignment:
Q  231 tagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattt 282  Q
    |||||||| ||||||| ||||| | ||||||||| |||||||||||||||||    
T  32335902 tagggggctaaaattgctacggtggcaaacatagggggccaaaagtgcattt 32335851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 287
Target Start/End: Complemental strand, 22341374 - 22341231
Alignment:
Q  145 gtggcctttgaccgagtcaaaattg-agggggcttgtgagttgcaaaaaggggtgaaattatggggttgaaaagtggnnnnnnnnaatagggggccaaaa 243  Q
    |||||||||||||| |||||||||  ||||||||| ||| ||||||||||||||||| ||| |||| || ||||||         |||||  | ||||||    
T  22341374 gtggcctttgaccgggtcaaaattatagggggcttatgaattgcaaaaaggggtgaagttagggggctggaaagtgattttttttaatagaagaccaaaa 22341275  T
Q  244 ttgatacggagccaaacatagagggccaaaagtgcattttagcc 287  Q
    ||| || ||||||||| |||| ||| ||||||||||||||||||    
T  22341274 ttgctatggagccaaatatagggggtcaaaagtgcattttagcc 22341231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 287
Target Start/End: Original strand, 22341767 - 22341908
Alignment:
Q  145 gtggcctttgaccgagtcaaaattgagggggcttgtgagttgcaaaaaggggtgaaattatggggttgaaaagtggnnnnnnnnaatagggggccaaaat 244  Q
    ||||||||||||||  ||||||||  |||||||| |||||||||||| |||||||| ||| |||| |||||||||         |||||| || ||||||    
T  22341767 gtggcctttgaccggatcaaaattaggggggcttatgagttgcaaaagggggtgaagtta-ggggctgaaaagtgattttttttaataggaggtcaaaat 22341865  T
Q  245 tgatacggagccaaacatagagggccaaaagtgcattttagcc 287  Q
    || ||| ||| ||||||||| ||  ||||| ||||||||||||    
T  22341866 tgctacagagtcaaacataggggaacaaaaatgcattttagcc 22341908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 37283009 - 37282952
Alignment:
Q  232 agggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagccta 289  Q
    ||||||||||||||  ||||||||||||||||  ||| ||||||||||||||||||||    
T  37283009 agggggccaaaattactacggagccaaacataaggggtcaaaagtgcattttagccta 37282952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 2683198 - 2683255
Alignment:
Q  231 tagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcct 288  Q
    |||||||||||||||| ||||| | |||| |||| ||||||||||||||||| |||||    
T  2683198 tagggggccaaaattgctacggtggcaaatatagggggccaaaagtgcatttaagcct 2683255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 22341659 - 22341715
Alignment:
Q  80 attagctaagagagggagcatgtg-attcttttaattttgaccattgatttttaatc 135  Q
    |||||||||||||||||||||||| || |||||||| ||||||| | ||||||||||    
T  22341659 attagctaagagagggagcatgtgaatacttttaatcttgaccactaatttttaatc 22341715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 46693023 - 46692968
Alignment:
Q  229 aatagggggccaaaattgatacggagccaaacatagagggccaaaagtgcatttta 284  Q
    |||||||| | ||||||  ||||||||||||| ||| |||||||||||||||||||    
T  46693023 aataggggccaaaaattactacggagccaaacttagggggccaaaagtgcatttta 46692968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 53196826 - 53196872
Alignment:
Q  90 agagggagcatgtga-ttcttttaattttgaccattgatttttaatc 135  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||||    
T  53196826 agagggagcatgtgagttcttttaatcctgaccattgatttttaatc 53196872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 25060 - 24999
Alignment:
Q  229 aatagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcctaa 290  Q
    |||||| ||||||||||| ||||  | ||||||||| |||||||||||||||||||||||||    
T  25060 aataggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcattttagcctaa 24999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 128407 - 128350
Alignment:
Q  231 tagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcct 288  Q
    |||||||||||||||||||||  | ||||||||| ||||||||||||||||| |||||    
T  128407 tagggggccaaaattgatacgacggcaaacatagggggccaaaagtgcatttaagcct 128350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 28086526 - 28086469
Alignment:
Q  233 gggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcctaa 290  Q
    |||||||||||||| ||| ||||||||||||  ||| |||||||||||||||||||||    
T  28086526 gggggccaaaattgctacagagccaaacataagggggcaaaagtgcattttagcctaa 28086469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 33735040 - 33734980
Alignment:
Q  229 aatagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcctaa 290  Q
    ||||||| ||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||    
T  33735040 aatagggagccaaaattgatacgcagccaaacata-aggggcaaaaatgcattttagcctaa 33734980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 24730981 - 24731046
Alignment:
Q  231 tagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcctaagttttt 296  Q
    |||||||||||||||| ||||| | ||||||||| || |||||||| ||||| ||||||| |||||    
T  24730981 tagggggccaaaattgctacggtgacaaacataggggaccaaaagtacatttaagcctaatttttt 24731046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 1920991 - 1920931
Alignment:
Q  229 aatagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagccta 289  Q
    |||||||||||||||||| ||||  | ||||||||| ||||||||||||| ||| ||||||    
T  1920991 aatagggggccaaaattgttacgatggcaaacatagggggccaaaagtgcgtttaagccta 1920931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 28086732 - 28086676
Alignment:
Q  80 attagctaagagagggagcatgtg-attcttttaattttgaccattgatttttaatc 135  Q
    |||||||||||||||||||||||| || |||||||| ||||||| | ||||||||||    
T  28086732 attagctaagagagggagcatgtgaatacttttaatcttgaccactaatttttaatc 28086676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 45782077 - 45782021
Alignment:
Q  231 tagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcc 287  Q
    |||||||||||||||| ||||| | ||||||||| || |||||||||||||| ||||    
T  45782077 tagggggccaaaattgctacggtggcaaacataggggaccaaaagtgcatttaagcc 45782021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 286
Target Start/End: Original strand, 28087666 - 28087805
Alignment:
Q  148 gcctttgaccgagtcaaaatt-gagggggcttgtgagttgcaaaaaggggtgaaattatggggttgaaaagtggnnnnnnnnaatagggggccaaaattg 246  Q
    ||||||||| | ||||||||| |||||||| | ||||||||||||  ||| ||| ||| |||| || ||||||         |||| | |||||||||||    
T  28087666 gcctttgactgggtcaaaattagagggggcctatgagttgcaaaagtgggcgaagttagggggctggaaagtgtttttttttaatatgaggccaaaattg 28087765  T
Q  247 atacggagccaaacatagagggccaaaagtgcattttagc 286  Q
     ||||||| |||| |||  |||||||||||||||||||||    
T  28087766 ctacggagtcaaatataaggggccaaaagtgcattttagc 28087805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 9154350 - 9154297
Alignment:
Q  234 ggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcc 287  Q
    ||||||||||||| ||||  | ||||||||||||| ||||||||||||| ||||    
T  9154350 ggggccaaaattgctacgatggcaaacatagagggtcaaaagtgcatttaagcc 9154297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 19275 - 19219
Alignment:
Q  80 attagctaagagagggagcatgtgatt-cttttaattttgaccattgatttttaatc 135  Q
    |||| |||||| ||||||||||||||| |||||||| ||||||||||||||||||||    
T  19275 attacctaagatagggagcatgtgatttcttttaatcttgaccattgatttttaatc 19219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 27167 - 27111
Alignment:
Q  80 attagctaagagagggagcatgtgatt-cttttaattttgaccattgatttttaatc 135  Q
    |||| |||||| ||||||||||||||| |||||||| ||||||||||||||||||||    
T  27167 attacctaagatagggagcatgtgatttcttttaatcttgaccattgatttttaatc 27111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 655584 - 655522
Alignment:
Q  229 aatagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcctaag 291  Q
    |||||||||||||||||| |||   | ||||||||| ||||||||||||||||| ||||||||    
T  655584 aatagggggccaaaattgctaccatggcaaacatagggggccaaaagtgcatttaagcctaag 655522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 9362798 - 9362741
Alignment:
Q  231 tagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcct 288  Q
    |||||| ||||||||| ||||| | ||||||||| ||||||||||||||||| |||||    
T  9362798 taggggaccaaaattgctacggcggcaaacatagtgggccaaaagtgcatttaagcct 9362741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 13118569 - 13118625
Alignment:
Q  234 ggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcctaa 290  Q
    ||||||||||||| ||||| | ||||||||  |||||| |||||||||| |||||||    
T  13118569 ggggccaaaattgctacggtgacaaacataaggggccataagtgcatttaagcctaa 13118625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 205185 - 205241
Alignment:
Q  231 tagggggccaaaattgatacggagccaaacatagagggccaaaagtgcattttagcc 287  Q
    ||||||| |||||||| ||||  | |||||||||||| |||||||||||||| ||||    
T  205185 tagggggtcaaaattgctacgacgacaaacatagaggaccaaaagtgcatttaagcc 205241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University