View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6193_high_3 (Length: 349)
Name: NF6193_high_3
Description: NF6193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6193_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 10 - 341
Target Start/End: Complemental strand, 18629814 - 18629483
Alignment:
| Q |
10 |
catcatcattcttccttttcatgtgagatggtcagaggatggttctgttgaatcagcggatgagaccacaaggtctttgaacaccaaggttcttgaaaga |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18629814 |
catcatcattcttccttttcatctgagatggtcagaggatggttctgttgaatcagcggatgagaccacaaggtctttgaacaccaaggttcttgaaaga |
18629715 |
T |
|
| Q |
110 |
gcaccttgttcggtagcgatccttgtgaatagaggacactcttctccattcaaccacaatgataattcaaagcaaattgccatgattttcttaggaggtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18629714 |
gcaccttgttcggtagcgatccttgtgaatagaggacactcttctccattcaaccacaatgagaattcaaagcaaattgccatgattttcttaggaggtt |
18629615 |
T |
|
| Q |
210 |
cagatgatagagaagcattgtgtttggctaaaaggacaatcaaagaagatacttatcacttggttgtgtatcacttggtttcaacaatcaagaatgatga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18629614 |
cagatgatagagaagcattgtgtttggctaaaaggacaatcaaagaagatacttatcacttggttgtgtatcacttggtttcaacaatcaagaatgatga |
18629515 |
T |
|
| Q |
310 |
attcactagttgggatgttatgcttgatgatg |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18629514 |
attcactagttgggatgttatgcttgatgatg |
18629483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 10 - 341
Target Start/End: Complemental strand, 18642522 - 18642191
Alignment:
| Q |
10 |
catcatcattcttccttttcatgtgagatggtcagaggatggttctgttgaatcagcggatgagaccacaaggtctttgaacaccaaggttcttgaaaga |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18642522 |
catcatcattcttccttttcatctgagatggtcagaggatggttctgttgaatcagcggatgagaccacaaggtctttgaacaccaaggttcttgaaaga |
18642423 |
T |
|
| Q |
110 |
gcaccttgttcggtagcgatccttgtgaatagaggacactcttctccattcaaccacaatgataattcaaagcaaattgccatgattttcttaggaggtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18642422 |
gcaccttgttcggtagcgatccttgtgaatagaggacactcttctccattcaaccacaatgagaattcaaagcaaattgccatgattttcttaggaggtt |
18642323 |
T |
|
| Q |
210 |
cagatgatagagaagcattgtgtttggctaaaaggacaatcaaagaagatacttatcacttggttgtgtatcacttggtttcaacaatcaagaatgatga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18642322 |
cagatgatagagaagcattgtgtttggctaaaaggacaatcaaagaagatacttatcacttggttgtgtatcacttggtttcaacaatcaagaatgatga |
18642223 |
T |
|
| Q |
310 |
attcactagttgggatgttatgcttgatgatg |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18642222 |
attcactagttgggatgttatgcttgatgatg |
18642191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 341
Target Start/End: Original strand, 18525393 - 18525724
Alignment:
| Q |
10 |
catcatcattcttccttttcatgtgagatggtcagaggatggttctgttgaatcagcggatgagaccacaaggtctttgaacaccaaggttcttgaaaga |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18525393 |
catcatcattcttccttttcatctgagatggtcagaggatggttctgttgaatcagcggatgagaccacaaggtctctgaacaccaaggttcttgaaaga |
18525492 |
T |
|
| Q |
110 |
gcaccttgttcggtagcgatccttgtgaatagaggacactcttctccattcaaccacaatgataattcaaagcaaattgccatgattttcttaggaggtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18525493 |
gcaccttgttcggtagcgatccttgtgaatagaggacactcttctccattcaaccacaatgagaattcaaagcaaattgccatgattttcttgggaggtt |
18525592 |
T |
|
| Q |
210 |
cagatgatagagaagcattgtgtttggctaaaaggacaatcaaagaagatacttatcacttggttgtgtatcacttggtttcaacaatcaagaatgatga |
309 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18525593 |
cagatgatagagaagcattatgtttggctaaaaggacaatcaaagaagatacttatcacttggttgtgtatcacttggtttcaacaatcaagaatgatga |
18525692 |
T |
|
| Q |
310 |
attcactagttgggatgttatgcttgatgatg |
341 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |
|
|
| T |
18525693 |
atccactagttgggatgttatgcttgatgatg |
18525724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 90 - 341
Target Start/End: Original strand, 18602722 - 18602973
Alignment:
| Q |
90 |
acaccaaggttcttgaaagagcaccttgttcggtagcgatccttgtgaatagaggacactcttctccattcaaccacaatgataattcaaagcaaattgc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18602722 |
acaccaaggttcttgaaagagcaccttgttcggtagcgatccttgtgaatagaggacactcttctccattcaaccacaatgagaattcaaagcaaattgc |
18602821 |
T |
|
| Q |
190 |
catgattttcttaggaggttcagatgatagagaagcattgtgtttggctaaaaggacaatcaaagaagatacttatcacttggttgtgtatcacttggtt |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18602822 |
catgattttcttaggaggttcagatgatagagaagcattgtgtttggctaaaaggacaatcaaagaagatacttatcacttggttgtgtatcacttggtt |
18602921 |
T |
|
| Q |
290 |
tcaacaatcaagaatgatgaattcactagttgggatgttatgcttgatgatg |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18602922 |
tcaacaatcaagaatgatgaattcactagttgggatgttatgcttgatgatg |
18602973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 341
Target Start/End: Original strand, 38576003 - 38576334
Alignment:
| Q |
10 |
catcatcattcttccttttcatgtgagatggtcagaggatggttctgttgaatcagcggatgagaccacaaggtctttgaacaccaaggttcttgaaaga |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38576003 |
catcatcattcttccttttcatctgagatggtcagaggatggttctgttgaatcggtggatgagaccacaaggtctttgaacaccaaggttcttgaaaga |
38576102 |
T |
|
| Q |
110 |
gcaccttgttcggtagcgatccttgtgaatagaggacactcttctccattcaaccacaatgataattcaaagcaaattgccatgattttcttaggaggtt |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38576103 |
gcaccttgttcggtagcaatccttgtgaatagaggacactcttctccattcaaccacaatgagaattcaaagcaaattgccatgattttcttaggaggtt |
38576202 |
T |
|
| Q |
210 |
cagatgatagagaagcattgtgtttggctaaaaggacaatcaaagaagatacttatcacttggttgtgtatcacttggtttcaacaatcaagaatgatga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38576203 |
cagatgatagagaagcattgtgtttggctaaaaggacaatcaaagaagatacttatcacttggttgtgtatcacttggtttcaacaatcaagaatgatga |
38576302 |
T |
|
| Q |
310 |
attcactagttgggatgttatgcttgatgatg |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38576303 |
attcactagttgggatgttatgcttgatgatg |
38576334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 341
Target Start/End: Original strand, 38583198 - 38583529
Alignment:
| Q |
10 |
catcatcattcttccttttcatgtgagatggtcagaggatggttctgttgaatcagcggatgagaccacaaggtctttgaacaccaaggttcttgaaaga |
109 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| ||| | || || |||||||||||||||||||||||||||||| |
|
|
| T |
38583198 |
catcatcattgttccttttcatttgagatggttagaggatggttctgttgaatcaggggacgcgaacatcaggtctttgaacaccaaggttcttgaaaga |
38583297 |
T |
|
| Q |
110 |
gcaccttgttcggtagcgatccttgtgaatagaggacactcttctccattcaaccacaatgataattcaaagcaaattgccatgattttcttaggaggtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||| |
|
|
| T |
38583298 |
gcaccttgttcggtagcgatccttgtgaatagaggatactcttctccattcaaccacaatgataatacaaagcaaattgccatgattttcttggggggtc |
38583397 |
T |
|
| Q |
210 |
cagatgatagagaagcattgtgtttggctaaaaggacaatcaaagaagatacttatcacttggttgtgtatcacttggtttcaacaatcaagaatgatga |
309 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| || |
|
|
| T |
38583398 |
cagatgatagagaagcgttatgtttagctaaaaggacaatcaaagaagatacttatcacttggttgtgtatcatttggtttcatcaaacaagaatgagga |
38583497 |
T |
|
| Q |
310 |
attcactagttgggatgttatgcttgatgatg |
341 |
Q |
| |
|
||||| |||||| |||||||||||||||| |
|
|
| T |
38583498 |
ggccactaattgggaggttatgcttgatgatg |
38583529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University