View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6193_high_5 (Length: 328)
Name: NF6193_high_5
Description: NF6193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6193_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 7995073 - 7995382
Alignment:
| Q |
10 |
catcatcatcataaggtagttgttgactcaagcaagatggtccggcaacaatatcgtcattatcgatataaacacccttttgcttattatcaattgatct |
109 |
Q |
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| T |
7995073 |
catcatcatcataaggtagttgttgactcaagcaagatggtccggcaacaatatcgtcattatcgatataaacacccttttgcttattatcaattgatcc |
7995172 |
T |
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| Q |
110 |
aggtgaagaaattgatgattttgaaaaagaacttgatcttgttcttgctgatgcaaatctcttcttagcattagggcttgattgataactccttacagaa |
209 |
Q |
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| T |
7995173 |
aggtgaagaaattgatgattttgaaaaagaacttgatcttgttcttgctgatgcaaatctcttcttagcattagggcttgattgataactccttacagaa |
7995272 |
T |
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| Q |
210 |
agggttcttttgttgtttggaatcaaattcgtcttagaagccgaagaaaatctctgtctaagtgaaatttcatcaaaactattagtactcattttcttgc |
309 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7995273 |
agtgttcttttgttgtttggaatcaaattcgtcttagaagccgaagaaaatctttgtctaagtgaaatttcatcaaaactattagtactcattttcttgc |
7995372 |
T |
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| Q |
310 |
atgatgatga |
319 |
Q |
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|||||||||| |
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| T |
7995373 |
atgatgatga |
7995382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 319
Target Start/End: Complemental strand, 8023723 - 8023419
Alignment:
| Q |
15 |
tcatcataaggtagttgttgactcaagcaagatggtccggcaacaatatcgtcattatcgatataaacacccttttgcttattatcaattgatctaggtg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8023723 |
tcatcataaggtagttgttgactcaagcaagatggtccggcaacaatatcgtcattatcgatataaacacccttttgcttattatcaattgatccaggtg |
8023624 |
T |
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| Q |
115 |
aagaaattgatgattttgaaaaagaacttgatcttgttcttgctgatgcaaatctcttcttagcattagggcttgattgataactccttacagaaagggt |
214 |
Q |
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| T |
8023623 |
aagaaattgatgattttgaaaaagaacttgatcttgttcttgctgatgcaaatctcttcttagcattagggcttgattgataactccttacagaaagtgt |
8023524 |
T |
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| Q |
215 |
tcttttgttgtttggaatcaaattcgtcttagaagccgaagaaaatctctgtctaagtgaaatttcatcaaaactattagtactcattttcttgcatgat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8023523 |
tcttttgttgtttggaatcaaattcgtcttagaagccgaagaaaatctttgtctaagtgaaatttcatcaaaactattagtactcattttcttgcatgat |
8023424 |
T |
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| Q |
315 |
gatga |
319 |
Q |
| |
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||||| |
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| T |
8023423 |
gatga |
8023419 |
T |
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