View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6193_low_16 (Length: 245)
Name: NF6193_low_16
Description: NF6193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6193_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 37575342 - 37575106
Alignment:
| Q |
1 |
tcaattttaatagtgtctgaaacagtctaggtggcagccaactacaactatgacattctaaataaccaatcataataaatgaatacattgagtgattcat |
100 |
Q |
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| T |
37575342 |
tcaattttaatagtgcctgaaacagtctaggtggcagccaactacaactatgacattctaaataaccaatcataataaatgaatacattgagtgattcat |
37575243 |
T |
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| Q |
101 |
tataaaaccagagagaaaataccttaaaataagtcgccttaaaaatgggtcagttataacttgtgcccatactaaatccatgatagttgatgagcaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37575242 |
tataaaaccagagagaaaataccttaaaataagtcgccttaaaaatgggtcagttataacttgtgcccatactaaatccatgatagttgatgagcaaaga |
37575143 |
T |
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| Q |
201 |
attacttcccactcggagaaagcattggtgatgatgt |
237 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
37575142 |
attacttcccactcggagaaagcattggtgattatgt |
37575106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 37581989 - 37581854
Alignment:
| Q |
102 |
ataaaaccagagagaaaataccttaaaataagtcgccttaaaaatgggtcagttataacttgtgcccatactaaatccatgatagttgatgagcaaagaa |
201 |
Q |
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||||||| ||||| |||||||||| ||||| | ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
37581989 |
ataaaactagagatcaaataccttataataattagccttaaaaatggatcagttataacttgtgctcatactaaacccatgatagttgatgagcaaagaa |
37581890 |
T |
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| Q |
202 |
ttacttcccactcggagaaagcattggtgatgatgt |
237 |
Q |
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| T |
37581889 |
ttgcttcccactcaaagaaagcattggcgattatgt |
37581854 |
T |
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