View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6193_low_17 (Length: 238)
Name: NF6193_low_17
Description: NF6193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6193_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 31092329 - 31092102
Alignment:
| Q |
1 |
aagtaaatattcatttacatgtcacatttacattgtctttgtagaatcctgaaactgaataaaataccatttgtaaataattctcttgtctaactaatgc |
100 |
Q |
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| T |
31092329 |
aagtaaatattcatttacatgtcacatttacattgtctttgtagaatcctgaaactgaataaaataccatttgtaaataattctcttgcctaactaatgc |
31092230 |
T |
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| Q |
101 |
cactagacagtgatttcatttgttttacaaaccagtttttgaaaaatcaattgaagaaaatatgcttgctagnnnnnnnnncctaattgattggtatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31092229 |
cactagacagtgatttcatttgttttacaaaccagtttttgaaaaatcaattgaagaaaatatgcttgctag-aaaaaaaacctaattgattggtatatt |
31092131 |
T |
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| Q |
201 |
ttagaggtgtttagaaataaaatgatgat |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31092130 |
ttagaggtgtttagaaataaaatgatgat |
31092102 |
T |
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