View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6193_low_18 (Length: 228)

Name: NF6193_low_18
Description: NF6193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6193_low_18
NF6193_low_18
[»] scaffold0029 (2 HSPs)
scaffold0029 (157-216)||(71468-71527)
scaffold0029 (24-84)||(71338-71398)
[»] chr8 (3 HSPs)
chr8 (24-84)||(9311453-9311513)
chr8 (24-84)||(14816998-14817058)
chr8 (24-84)||(14828681-14828741)
[»] chr5 (1 HSPs)
chr5 (24-84)||(19718155-19718215)
[»] chr1 (5 HSPs)
chr1 (154-216)||(2938938-2939001)
chr1 (24-84)||(2939068-2939128)
chr1 (24-84)||(46015424-46015484)
chr1 (154-212)||(33333038-33333096)
chr1 (24-84)||(33332911-33332971)
[»] chr7 (2 HSPs)
chr7 (24-84)||(45087523-45087583)
chr7 (154-212)||(45087420-45087478)
[»] chr4 (1 HSPs)
chr4 (24-84)||(11039009-11039069)
[»] chr2 (3 HSPs)
chr2 (24-84)||(7190451-7190511)
chr2 (24-84)||(13810149-13810210)
chr2 (159-216)||(7190314-7190376)
[»] chr6 (1 HSPs)
chr6 (27-84)||(269814-269871)


Alignment Details
Target: scaffold0029 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 71468 - 71527
Alignment:
Q  157 ggttatttcatgaggatgaagatgttttatgagtttgttttgtatgagaggatgatgatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  71468 ggttatttcatgaggatgaagatgttttatgagtttgttttgtatgagaggatgatgatg 71527  T

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Target: scaffold0029; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 71338 - 71398
Alignment:
Q  24 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 84  Q
    |||||||||||| ||||||||||||||  |||||||| ||||||||||||| |||||||||    
T  71338 tggttttgaatagtatgaaagaaagttgaaaaatttaggattattgtgaaaagggtctgaa 71398  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 9311513 - 9311453
Alignment:
Q  24 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 84  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  9311513 tggttttgaataatatgaaagaaagtttgaaaatttgggattattgtgaaatgggtctgaa 9311453  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 14817058 - 14816998
Alignment:
Q  24 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 84  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  14817058 tggttttgaataatatgaaagaaagtttgaaaaattgggattattgtgaaatgggtctgaa 14816998  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 14828681 - 14828741
Alignment:
Q  24 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 84  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  14828681 tggttttgaataatatgaaagaaagtttgaaaaattgggattattgtgaaatgggtctgaa 14828741  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 19718215 - 19718155
Alignment:
Q  24 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 84  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  19718215 tggttttgaataatatgaaagaaagtttgaaaatttgggattattgtgaaatgggtctgaa 19718155  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 2939001 - 2938938
Alignment:
Q  154 atgggttatttcatgaggatgaagatgttttatgag-tttgttttgtatgagaggatgatgatg 216  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  2939001 atgggttatttcatgaggatgaagatgttttatgagtttttttttgtatgagaggatgatgatg 2938938  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 2939128 - 2939068
Alignment:
Q  24 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 84  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||    
T  2939128 tggttttgaataatatgaaagaaagtttgaaaatttgggattattgttaaatgggtctgaa 2939068  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 46015424 - 46015484
Alignment:
Q  24 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 84  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  46015424 tggttttgaataatatgaaagaaagtttgaaaatttggaattattgtgaaatgggtctgaa 46015484  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 33333038 - 33333096
Alignment:
Q  154 atgggttatttcatgaggatgaagatgttttatgagtttgttttgtatgagaggatgat 212  Q
    |||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  33333038 atgggttatttcatgaggatgaagatgttttatgaggtctttttgtatgagaggatgat 33333096  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 33332911 - 33332971
Alignment:
Q  24 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 84  Q
    |||||||||||||||||||||||||||||||| |||  |||||||||||||||| ||||||    
T  33332911 tggttttgaataatatgaaagaaagtttgaaagtttgggattattgtgaaatggatctgaa 33332971  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 45087583 - 45087523
Alignment:
Q  24 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 84  Q
    |||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  45087583 tggttttgaataatatgaaagaaagtttaaaaatttgggattattgtgaaatgggtctgaa 45087523  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 45087478 - 45087420
Alignment:
Q  154 atgggttatttcatgaggatgaagatgttttatgagtttgttttgtatgagaggatgat 212  Q
    |||| |||||||||||||||||||||||||||||||  | |||||||||||||||||||    
T  45087478 atggattatttcatgaggatgaagatgttttatgagggttttttgtatgagaggatgat 45087420  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 11039069 - 11039009
Alignment:
Q  24 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 84  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  11039069 tggttttgaataatatgaaagaaagtttgaaaatttgggattattgtgaaatgggtttgaa 11039009  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 7190511 - 7190451
Alignment:
Q  24 tggttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 84  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  7190511 tggttttgaataatatgaaagaaagtttgaaaatttgggattattgtgaaatgggtttgaa 7190451  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 13810149 - 13810210
Alignment:
Q  24 tggttttgaataatatgaaagaaagttt-gaaaatttaagattattgtgaaatgggtctgaa 84  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  13810149 tggttttgaataatatgaaagaaagtttagaaaatttgggattattgtgaaatgggtctgaa 13810210  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 7190376 - 7190314
Alignment:
Q  159 ttatttcatgaggatgaagatgttttatgag-----tttgttttgtatgagaggatgatgatg 216  Q
    |||||||| ||||||||||||||||||||||     ||| |||||||||||||||||||||||    
T  7190376 ttatttcacgaggatgaagatgttttatgagtttttttttttttgtatgagaggatgatgatg 7190314  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 269814 - 269871
Alignment:
Q  27 ttttgaataatatgaaagaaagtttgaaaatttaagattattgtgaaatgggtctgaa 84  Q
    ||||||||| |||||||||||||||||||||||  | |||||||||| ||||||||||    
T  269814 ttttgaatactatgaaagaaagtttgaaaatttggggttattgtgaagtgggtctgaa 269871  T

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