View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6193_low_2 (Length: 641)
Name: NF6193_low_2
Description: NF6193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6193_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 12 - 630
Target Start/End: Original strand, 32666736 - 32667354
Alignment:
| Q |
12 |
catcatcatacgccaataataagtcaatgcagctggaactgaaccaatcatcaatatcaacctccatgcaacgtcagcctccggcggcacatcaaaagcc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32666736 |
catcatcatacgccaataataagtcaatgcagctggaactgaaccaatcatcaatatcaacctccatgcaacgtcagcctccggcggcacatcaaaagcc |
32666835 |
T |
|
| Q |
112 |
gttgccggcttcgaaccgctgcgaaataccaagcaaaccaccatagtaacagttgcactagccaatataccaaacccttgcatagaaaaaaccgcagcta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32666836 |
gttgccggcttcgaaccgctgcgaaataccaagcaaaccaccatagtaacagttgcactagccaatataccaaacccttgcatagaaaaaaccgcagcta |
32666935 |
T |
|
| Q |
212 |
taaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaaggataatcaccaccaattccaagccctaagaagaatctaaagaa |
311 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32666936 |
taaaagaacctcttgtccttttattagcaaactcagacataatggtagaagataaaggataatcaccaccaattccaagccctaagaagaatctaaagaa |
32667035 |
T |
|
| Q |
312 |
accaagagatagtaaaacacaagctctctttgttgtacagatggagaagccagaagctagagagcttgttagcatcaataataaggcgataccgtagacg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32667036 |
accaagagatagtaaaacacaagctctctttgttgtacagatggagaagccagaagctagagagcttgttagcatcaataataaggcgataccgtagacg |
32667135 |
T |
|
| Q |
412 |
tggcgccggccttttaggtctccgaggcgtccgaataggagctgaccgaaggcggttcctaggagtgcgacggagacaagagctgagaccacgaccgggt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
32667136 |
tggcgccggccttttaggtctccgaggcgtccgaataggagctgaccgaaggcggttcctaggagtgcaacggagacaagggctgagaccacgaccgggt |
32667235 |
T |
|
| Q |
512 |
tgacttgacggatttcttggtggtcagagtagtatattcttcctagcatctttgtgatgagtgtgatggagaagaggtcataagagtcagtgaaaagtcc |
611 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
32667236 |
tgacttgacggatttcttggtggtcggagtagtatattcttcctagcatctttgtgatgagtgtgatggaaaaaaggtcataagagtcagtgaaaagtcc |
32667335 |
T |
|
| Q |
612 |
cattcctgctatgatgatg |
630 |
Q |
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||||||||||||||||||| |
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| T |
32667336 |
cattcctgctatgatgatg |
32667354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 37315765 - 37315913
Alignment:
| Q |
171 |
agccaatataccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaagga |
270 |
Q |
| |
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|||||| || |||||||||||||||| |||||||| ||||||||| | || | ||| |||| || ||| | ||||||||||| |||| || | ||| |
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| T |
37315765 |
agccaaaattccaaacccttgcatagcaaaaaccgaagctataaacgcgccacgagtctttttgttggcatattcagacataatagtagctgaaagaggg |
37315864 |
T |
|
| Q |
271 |
taatcaccaccaattccaagccctaagaagaatctaaagaaaccaagag |
319 |
Q |
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|||||||||||||| |||| |||| ||||||||||||||| ||||| |
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|
| T |
37315865 |
taatcaccaccaataccaaaacctagccagaatctaaagaaacaaagag |
37315913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 289
Target Start/End: Complemental strand, 33109402 - 33109294
Alignment:
| Q |
181 |
ccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaaggataatcaccac |
280 |
Q |
| |
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||||| |||||||||| ||| || ||||| ||||||| |||| ||| | || || ||| ||||||||||||| |||| ||| | ||| |||||||||| |
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| T |
33109402 |
ccaaatccttgcatagcaaacactgcagcgataaaagctcctcgcgtcttcttgttcgcatactcagacataattgtagcagaaagagggtaatcaccac |
33109303 |
T |
|
| Q |
281 |
caattccaa |
289 |
Q |
| |
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||||||||| |
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|
| T |
33109302 |
caattccaa |
33109294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 289
Target Start/End: Complemental strand, 33115437 - 33115329
Alignment:
| Q |
181 |
ccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaaggataatcaccac |
280 |
Q |
| |
|
||||| |||||||||| ||||| || |||||||| | ||| | ||| ||||||||||| |||||||||| || |||| || | ||| |||||||| | |
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| T |
33115437 |
ccaaaaccttgcatagcgaaaacagccgctataaatgcaccacgagtctttttatttgcatactcagacatgatagtagctgaaagagggtaatcaccgc |
33115338 |
T |
|
| Q |
281 |
caattccaa |
289 |
Q |
| |
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||||||||| |
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|
| T |
33115337 |
caattccaa |
33115329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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