View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6193_low_3 (Length: 454)
Name: NF6193_low_3
Description: NF6193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6193_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 439
Target Start/End: Original strand, 45603935 - 45604368
Alignment:
| Q |
10 |
aatatcccatgaataacatatgaagagtaccatat----agtaattagttcttaatctaaaaatgaaattacatgtgtgtgcacaaaagcaactctagca |
105 |
Q |
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| T |
45603935 |
aatatcccaggaataacatatgaagagcaccatatatatagtaattagttcttaatctaaaaatgaaattacatgtgtgtgcacaaaagcaactctaaca |
45604034 |
T |
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| Q |
106 |
aaataacaaataatttcatgtgtatatggtaaccctgtggatattgaaatcatttgaatttcgtaggaggaatatagtaaatacaatacatgacatacat |
205 |
Q |
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| T |
45604035 |
aaataacaaataatttcatgtgtatatggtaaccctgtggaaattgaaatcatttgaatttggtaggaggaatatagtaaatacaatacattacatacat |
45604134 |
T |
|
| Q |
206 |
aattcagtatgtataattcaaagccctcaaacgtacattgcatcattgcttagattgaaattgttacttaaatcaactccaggcatgcaatggacaaacc |
305 |
Q |
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| T |
45604135 |
aattcagtatgtataattcaaagccctcaaacgtacattgcatcattgcttagattgaaattgttacttaaatcaactccaggcatgcaatggacaaacc |
45604234 |
T |
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| Q |
306 |
catttcccacaatttgatttgcaaatttaatctgtgaattgaacatctcagtggctgaaatgttagtcacactattatgaaactctccattgaagggtcc |
405 |
Q |
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| T |
45604235 |
catttcccacaatttgatttgcaaatttaatctgtgaattgaacatctcagtggctgaaatgttagtcacactattatgaaactctccattgaagggtcc |
45604334 |
T |
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| Q |
406 |
ttcttgcattgtaacttcttgaaaagctgaattt |
439 |
Q |
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| T |
45604335 |
ttcttgcattgtaacttcttgaaaagctgaattt |
45604368 |
T |
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